Information for 3-GCTTCCCTGC (Motif 23)

A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C
Reverse Opposite:
T A C G T G A C G T C A C T A G C A T G A T C G T G C A C T G A A T C G T A G C
p-value:1e-9
log p-value:-2.278e+01
Information Content per bp:1.533
Number of Target Sequences with motif288.0
Percentage of Target Sequences with motif39.08%
Number of Background Sequences with motif12807.2
Percentage of Background Sequences with motif28.20%
Average Position of motif in Targets49.1 +/- 25.2bp
Average Position of motif in Background50.1 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCTTCCCTGC
GCTTCC----
 A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C
A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCTTCCCTGC
NNACTTGCCTT-
 A C G T A C G T A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCTTCCCTGC
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCTTCCCTGC-
NCTTCCCGCCC
 A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C A C G T
A G T C A G T C A G C T A C G T A T G C A G T C A G T C C A T G A G T C A G T C G A T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCTTCCCTGC----
--CCCCCTGCTGTG
 A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

STAT3/MA0144.2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTTCCCTGC--
-TTTCCCAGAAN
 A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C A C G T A C G T
A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCTTCCCTGC-
-ATTTCCTGTN
 A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C A C G T
A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCTTCCCTGC--
--TGCCCAGNHW
 A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C A C G T A C G T
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GCTTCCCTGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

ZEB1/MA0103.2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCTTCCCTGC
CCTCACCTG-
 A T C G T A G C G A C T A C G T T A G C G T A C G A T C C A G T A C T G A T G C
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T