Information for 15-TGCACACACATGTATG (Motif 19)

A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T C T G A A G T C G T C A A G C T A C T G A C G T A C T G A C G T A C T G A C G T C A T G A G T C C G T A
p-value:1e-10
log p-value:-2.478e+01
Information Content per bp:1.899
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.7 +/- 14.9bp
Average Position of motif in Background70.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGCACACACATGTATG
AGCGGCACACACGCAA---
 A C G T A C G T A C G T A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGCACACACATGTATG
-AYATGYATATGCATR
 A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

PB0104.1_Zscan4_1/Jaspar

Match Rank:3
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------TGCACACACATGTATG
TACATGTGCACATAAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:4
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------TGCACACACATGTATG
CAGATGTGCACATACGT-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T A C G T A C G T A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGCACACACATGTATG
----AACACGTGTT--
 A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
A C G T A C G T A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGCACACACATGTATG
CGAAGCACACAAAATA---
 A C G T A C G T A C G T A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TGCACACACATGTATG---
--TAAATACATGTAAAATT
 A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G A C G T A C G T A C G T
A C G T A C G T C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

Twist2/MA0633.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TGCACACACATGTATG
----NACATATGGN--
 A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.54
Offset:-7
Orientation:forward strand
Alignment:-------TGCACACACATGTATG
NNNVCTGWGYAAACASN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TGCACACACATGTATG
---AAGCACATGG---
 A C G T C T A G G T A C G T C A A G T C C G T A A G T C C G T A G T A C C T G A A C G T C T A G A G C T C G T A A C G T A C T G
A C G T A C G T A C G T T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T