Information for 2-CSCCTCTTCWCYM (Motif 3)

A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C
Reverse Opposite:
A C T G C T A G A C T G C G A T A C T G C G T A C G T A A C T G C G T A A C T G A C T G A T C G A C T G
p-value:1e-11
log p-value:-2.588e+01
Information Content per bp:1.879
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.3 +/- 29.0bp
Average Position of motif in Background54.6 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0124.1_Gabpa_2/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CSCCTCTTCWCYM----
-CCGTCTTCCCCCTCAC
 A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C A C G T A C G T A C G T A C G T
A C G T T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CSCCTCTTCWCYM
----GCTTCC---
 A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CSCCTCTTCWCYM
-NSCACTYVAV--
 A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----CSCCTCTTCWCYM
NTCNTCCCCTATNNGNN-
 A C G T A C G T A C G T A C G T A C G T A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CSCCTCTTCWCYM
-ACCACTTGAA--
 A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CSCCTCTTCWCYM--------
-GCCTCCTCCMTCWGACTGKS
 A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G A T C G A T C G A C T A G T C A G T C G C A T A G T C A G T C G T A C A G C T A G T C G C T A T C A G C T G A A G T C G A C T T A C G A C T G T A G C

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CSCCTCTTCWCYM
TTCCCCCTAC------
 A C G T A C G T A C G T A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CSCCTCTTCWCYM
-RSCACTYRAG--
 A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CSCCTCTTCWCYM
--CCACTTGAA--
 A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CSCCTCTTCWCYM-
TGACCTTTGCCCTAN
 A C G T A G T C A T G C A G T C A G T C C G A T A G T C A C G T A C G T A G T C C G T A A G T C A G T C G T A C A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C