Information for 20-CAAVTAATGAGVAAGA (Motif 26)

A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
Reverse Opposite:
A G C T G T A C A C G T A C G T A C G T A G T C C G A T G T A C C G T A A C G T A G C T G T C A A G T C A C G T A C G T A C T G
p-value:1e-9
log p-value:-2.189e+01
Information Content per bp:1.802
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 22.0bp
Average Position of motif in Background59.7 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0028.1_En1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAAVTAATGAGVAAGA
GCGAACTAATTAATGC--
 A C G T A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C A C G T A C G T

PH0132.1_Pax6/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAAVTAATGAGVAAGA
GNNAATTAATTAATCA--
 A C G T A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
C A T G G C A T A T G C T G C A T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T G A T C T C G A A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAAVTAATGAGVAAGA
CAAAACCAATTAATTT--
 A C G T A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T A C G T A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAAVTAATGAGVAAGA
-ADBTAATTAR-----
 A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G A C G T A C G T A C G T A C G T A C G T

PH0160.1_Shox2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAAVTAATGAGVAAGA
NNNAATTAATTAANNNG-
 A C G T A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
T A G C G T C A A G T C T C G A G T C A A G C T G A C T T C G A C G T A G A C T A G C T C T G A C T G A A T G C C A T G G T A C A T C G A C G T

PH0070.1_Hoxc5/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAAVTAATGAGVAAGA
CGAATTAATTAATTACT
 A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
T A G C T A C G G T C A T C G A A G C T G A C T G T C A C G T A G C A T C A G T C T G A T C G A A G C T G C A T T G C A G A C T G C A T

PH0058.1_Hoxb3/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAAVTAATGAGVAAGA
TGAGCTAATTAGTTGGA
 A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

PH0133.1_Pax7/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAAVTAATGAGVAAGA
CGAACTAATTAGTACTA
 A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
G T A C T A C G G C T A G T A C G A T C G A C T T C G A C G T A G C A T A G C T C T G A C T A G A C G T G C T A T G A C C A G T C T G A

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAAVTAATGAGVAAGA
AACAACCAATTAATTC--
 A C G T A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C A C G T A C G T

PH0092.1_Lhx2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAAVTAATGAGVAAGA
TAAACTAATTAGTGAAC
 A C G T A G T C C G T A C G T A T A C G A C G T T C G A C G T A A C G T A C T G C G T A C T A G T C G A G T C A C G T A A C T G C T G A
C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C