Information for 9-SAGCCHWGKAGCC (Motif 21)

A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C
Reverse Opposite:
C T A G C T A G A G T C A G C T T G C A G A T C C G T A C G A T A C T G A T C G A G T C C G A T A T G C
p-value:1e-7
log p-value:-1.822e+01
Information Content per bp:1.640
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif6.96%
Number of Background Sequences with motif1245.5
Percentage of Background Sequences with motif2.54%
Average Position of motif in Targets48.6 +/- 26.0bp
Average Position of motif in Background48.6 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:SAGCCHWGKAGCC
CAGCC--------
 A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:SAGCCHWGKAGCC
AAGGCAAGTGT--
 A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--SAGCCHWGKAGCC
CACAGN---------
 A C G T A C G T A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:SAGCCHWGKAGCC-
NTGCCCTTGGGCGN
 A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:SAGCCHWGKAGCC-
CTGGCAGNCTGCCA
 A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-SAGCCHWGKAGCC
BCAGACWA------
 A C G T A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----SAGCCHWGKAGCC
NNNNTGAGCACTGTNNG-
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G A C G T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--SAGCCHWGKAGCC
CGGAGC---------
 A C G T A C G T A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:SAGCCHWGKAGCC---
TTGGCANNNTGCCAAG
 A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C A C G T A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.49
Offset:-7
Orientation:forward strand
Alignment:-------SAGCCHWGKAGCC
GRTGMTRGAGCC--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G A T G C G T A C G C A T G C A T C T A G A C G T T C G A T A C G A G T C A G T C
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T