Information for 7-GATGAGGGATGAG (Motif 15)

A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C G T A A C G T A G T C A G T C A G T C A C G T A G T C G T C A A C G T G T A C
p-value:1e-9
log p-value:-2.088e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.6 +/- 18.2bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GATGAGGGATGAG
-ATGATKGATGRC
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GATGAGGGATGAG--
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A C G T A C G T A C G T A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GATGAGGGATGAG-
----NNGGATTAGN
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

PH0139.1_Pitx3/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GATGAGGGATGAG-----
--AGGGGGATTAGCTGCC
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GATGAGGGATGAG-
-----GGGATTANN
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GATGAGGGATGAG-
----VRGGATTARN
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GATGAGGGATGAG-
------GGATTAGC
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GATGAGGGATGAG
-----GGGATTAA
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GATGAGGGATGAG-
----GNGGATTAGN
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GATGAGGGATGAG-----
-NANAGGGATTAATTATN
 A C T G G T C A A C G T A C T G C G T A A C T G A C T G A C T G C G T A A C G T A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C