Information for 6-TGCCTGGTAGCGT (Motif 13)

A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
Reverse Opposite:
G T C A A G T C C T A G A G T C A G C T C T G A G A T C G T A C C G T A A C T G A C T G A G T C C G T A
p-value:1e-9
log p-value:-2.189e+01
Information Content per bp:1.822
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif21.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.8 +/- 27.3bp
Average Position of motif in Background50.1 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCTGGTAGCGT
NNACTTGCCTT-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCTGGTAGCGT
TGCCCNGGGGCA-
 A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCCTGGTAGCGT
TGCCCTNGGGCA-
 A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

TFAP2C/MA0524.2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCTGGTAGCGT
TGCCCTNGGGCA-
 A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGGTAGCGT
TTGCGTGCVA----
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCCTGGTAGCGT
BTGABTGACAGS--
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTGGTAGCGT
NCTTCCNGGAAGNN-
 A C G T A C G T A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGCCTGGTAGCGT
TGCGTG-------
 A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGGTAGCGT
CTGTCTGG------
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGGTAGCGT
TWGTCTGV------
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G C A T G A G C T C T G A A C T G A G T C T A C G A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T