Information for 3-GAGCCAATGASGG (Motif 6)

C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G
Reverse Opposite:
A G T C G T A C A T C G A G C T A T G C G T C A A C G T A G C T A C T G A C T G G A T C A C G T A G T C
p-value:1e-12
log p-value:-2.800e+01
Information Content per bp:1.736
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif81.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets59.1 +/- 27.7bp
Average Position of motif in Background47.3 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GAGCCAATGASGG
-AGCCAATCGG--
 C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAATGASGG
ACTAGCCAATCA---
 A C G T A C G T C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GAGCCAATGASGG
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGCCAATGASGG
-TGCCAA------
 C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAATGASGG
CGTGCCAAG-----
 A C G T C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCAATGASGG----
TGGACCAATCAGCACTCT
 A C G T C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGCCAATGASGG
CAGCC--------
 C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.59
Offset:-10
Orientation:reverse strand
Alignment:----------GAGCCAATGASGG--
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAATGASGG
ATAATCCC-------
 A C G T A C G T C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0109.1_Nkx1-1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGCCAATGASGG---
TGCGCTAATTAGTGGGA
 A C G T C T A G C G T A C A T G A G T C A G T C C T G A T G C A A C G T T A C G C T G A A T G C C A T G C T A G A C G T A C G T A C G T
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A