Information for 2-GAMATNTGAT (Motif 5)

A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T
Reverse Opposite:
C T G A A C G T A G T C C G T A C T A G G T C A C G A T A C T G G C A T A G T C
p-value:1e-12
log p-value:-2.886e+01
Information Content per bp:1.757
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif103.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets33.8 +/- 23.9bp
Average Position of motif in Background54.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GAMATNTGAT--
GWAAYHTGABMC
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T A C G T A C G T
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GAMATNTGAT--
GWAAYHTGAKMC
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T A C G T A C G T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

PB0105.1_Arid3a_2/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAMATNTGAT------
-NNATNTGATANNNNN
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

NEUROG2/MA0669.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAMATNTGAT
GACATATGTT
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T
C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

USF2/MA0526.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAMATNTGAT-
GTCATGTGACC
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T A C G T
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C

TFEB/MA0692.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAMATNTGAT
GTCACGTGAT
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T
T C A G A C G T T G A C C G T A A G T C T C A G C A G T C A T G T C G A A G C T

TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAMATNTGAT
BRGTCACGTGAC
 A C G T A C G T A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T
A C T G C T A G T C A G A G C T T A G C G T C A A G T C T C A G G C A T T A C G T C G A A G T C

SREBF2(var.2)/MA0828.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAMATNTGAT
GTCACGTGAT
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T
T C A G G C A T T A G C C T G A A T G C T A C G G A C T A T C G C G T A A G C T

Srebf1(var.2)/MA0829.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAMATNTGAT
GTCACGTGAT
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T
T C A G C G A T A T G C C T G A A T G C T A C G G A C T A C T G C G T A A G C T

TFEC/MA0871.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAMATNTGAT
NTCACGTGAT
 A C T G C G T A G T A C C G T A A C G T G A T C A C G T C T A G C G T A A G C T
T C A G A C G T A G T C C G T A A G T C T C A G C G A T A C T G G T C A A G C T