Information for 2-TAGGTGGCAGTAT (Motif 2)

G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T
Reverse Opposite:
C G T A C A G T C T G A A G T C A C G T A C T G G T A C A G T C G C T A A G T C A G T C C G A T C G T A
p-value:1e-14
log p-value:-3.428e+01
Information Content per bp:1.801
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif8.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.7 +/- 21.0bp
Average Position of motif in Background61.0 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TAGGTGGCAGTAT
-AGGTGTCA----
 G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------TAGGTGGCAGTAT
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Myb/MA0100.2/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TAGGTGGCAGTAT-
----TGGCAGTTGN
 G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TAGGTGGCAGTAT-
-AGGTGNCAGACAG
 G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T A C G T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PH0164.1_Six4/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TAGGTGGCAGTAT-
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

TBX5/MA0807.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TAGGTGGCAGTAT
-AGGTGTGA----
 G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T
A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------TAGGTGGCAGTAT
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TAGGTGGCAGTAT
-AGGTGHCAGACA
 G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

TBX4/MA0806.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TAGGTGGCAGTAT
-AGGTGTGA----
 G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T
A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TAGGTGGCAGTAT
-ARNTGACA----
 G A C T C G T A A C T G C T A G C G A T A C T G A C T G A G T C C G T A A C T G G A C T G T C A C G A T
A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T