Information for 7-CAAGCTTTGC (Motif 13)

A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C
Reverse Opposite:
C T A G A T G C T C G A G T C A T G C A A C T G A T G C A C G T A C G T A C T G
p-value:1e-10
log p-value:-2.362e+01
Information Content per bp:1.833
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.25%
Number of Background Sequences with motif158.0
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets36.2 +/- 22.9bp
Average Position of motif in Background49.5 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CAAGCTTTGC
CAAGCTT---
 A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CAAGCTTTGC--
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T A C G T A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAAGCTTTGC
AAATCACTGC
 A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAAGCTTTGC--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAAGCTTTGC---
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CAAGCTTTGC---
---CCTTTGATGT
 A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAAGCTTTGC---
---CCWTTGTYYB
 A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAAGCTTTGC--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAAGCTTTGC---
---YCTTTGTTCC
 A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CAAGCTTTGC
----CTTTGT
 A G T C G T C A T G C A T A C G G T A C A C G T A C G T A G C T A T C G A G T C
A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T