Information for 6-AGCTGTAAAT (Motif 12)

C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T
Reverse Opposite:
C T G A C G A T C G A T G A C T T C G A G T A C C G T A A T C G G A T C G C A T
p-value:1e-10
log p-value:-2.436e+01
Information Content per bp:1.689
Number of Target Sequences with motif61.0
Percentage of Target Sequences with motif6.85%
Number of Background Sequences with motif1245.8
Percentage of Background Sequences with motif2.62%
Average Position of motif in Targets53.2 +/- 26.6bp
Average Position of motif in Background50.7 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTAAAT---
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTAAAT---
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTAAAT---
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTAAAT--
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----AGCTGTAAAT---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0102.1_Meis1/Jaspar

Match Rank:6
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTAAAT--
AACGAGCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTAAAT--
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AGCTGTAAAT
AGGTGTTAAT
 C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGCTGTAAAT
AAGGTGTKAA-
 A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----AGCTGTAAAT--
AATTACCTGTCAATAC
 A C G T A C G T A C G T A C G T C G T A C T A G A T G C G C A T C A T G A G C T C T G A C G T A G C T A G A C T A C G T A C G T
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C