Information for 14-CGGGATTCGC (Motif 27)

A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G C G T A C G T A A C G T A G T C A G T C A G T C A C T G
p-value:1e-6
log p-value:-1.449e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 19.7bp
Average Position of motif in Background35.8 +/- 21.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CGGGATTCGC----
AGGGGGATTAGCTGCC
 A C G T A C G T A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CGGGATTCGC--
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGGGATTCGC
--GGATTAGC
 A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGGGATTCGC--
GGGGATTCCCCC
 A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A C G T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

PITX3/MA0714.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGGGATTCGC
-GGGATTANN
 A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGGGATTCGC
VRGGATTARN
 A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CGGGATTCGC
NGGGATTA--
 A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGGGATTCGC--
AGGGGAATCCCCT
 A C G T A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A C G T A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CGGGATTCGC----
NNAAGGGATTAACGANT
 A C G T A C G T A C G T A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGGGATTCGC
NNGGATTAGN
 A G T C A C T G A C T G A C T G C G T A A C G T A C G T A G T C A C T G A G T C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C