Information for 5-CACTTTCTAAVGGAGS (Motif 17)

A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
Reverse Opposite:
A T G C A G T C A G C T A G T C G T A C A G T C C G A T C A G T C T G A A C T G C G T A T C G A C G T A A C T G A C G T T A C G
p-value:1e-11
log p-value:-2.545e+01
Information Content per bp:1.718
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.9 +/- 28.9bp
Average Position of motif in Background41.9 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CACTTTCTAAVGGAGS
MRSCACTYAA---------
 A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CACTTTCTAAVGGAGS
CACTTCCTCT------
 A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CACTTTCTAAVGGAGS
ACCACTTAA---------
 A C G T A C G T A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CACTTTCTAAVGGAGS
ACCACTTAA---------
 A C G T A C G T A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CACTTTCTAAVGGAGS
AAGCACTTAA---------
 A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CACTTTCTAAVGGAGS
------CTAATKGV--
 A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CACTTTCTAAVGGAGS
GCACTTAA---------
 A C G T A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------CACTTTCTAAVGGAGS
CATAACCACTTAACAAC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CACTTTCTAAVGGAGS
ACCACTTGAA--------
 A C G T A C G T A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---CACTTTCTAAVGGAGS
AASCACTCAA---------
 A C G T A C G T A C G T A T G C C G T A A G T C A C G T A C G T G A C T A G T C A G C T G T C A C G T A T A C G C A T G A C T G T C G A C T A G T A C G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T