Information for 7-BGCAGCCAATGRG (Motif 11)

A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
Reverse Opposite:
A G T C A G C T A T G C C G T A A C G T C G A T A C T G C A T G A G T C G C A T A C T G G T A C T G A C
p-value:1e-12
log p-value:-2.927e+01
Information Content per bp:1.754
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif59.3
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets50.9 +/- 24.3bp
Average Position of motif in Background48.0 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.79
Offset:3
Orientation:forward strand
Alignment:BGCAGCCAATGRG
---AGCCAATCGG
 A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:BGCAGCCAATGRG
ACTAGCCAATCA-
 A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--BGCAGCCAATGRG
AAATGGACCAATCAG
 A C G T A C G T A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:BGCAGCCAATGRG
-BCAGACWA----
 A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:BGCAGCCAATGRG
----GACAATGNN
 A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:BGCAGCCAATGRG
---TGCCAA----
 A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---BGCAGCCAATGRG
ATTTGCATACAATGG-
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:BGCAGCCAATGRG
-CGTGCCAAG---
 A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:BGCAGCCAATGRG----
NNTNNACAATGGGANNN
 A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

NFYA/MA0060.2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:BGCAGCCAATGRG------
-TGGACCAATCAGCACTCT
 A C T G A C T G A G T C C G T A A C T G G A T C A G T C C G T A C G T A A C G T A T C G C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T