Information for 4-VAGAAAGGCTGVCAGG (Motif 5)

T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
Reverse Opposite:
A G T C G T A C A C G T A T C G A C T G A G T C C T G A A C T G A G T C G T A C A C G T A C G T A C G T A T G C A C G T A T C G
p-value:1e-10
log p-value:-2.390e+01
Information Content per bp:1.762
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.3 +/- 23.4bp
Average Position of motif in Background48.5 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--VAGAAAGGCTGVCAGG
AAAACAAAGG--------
 A C G T A C G T T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:VAGAAAGGCTGVCAGG
AACAAAGG--------
 T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:VAGAAAGGCTGVCAGG
RACAAWGG--------
 T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:VAGAAAGGCTGVCAGG
-AAAWWTGCTGACWWD
 T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
A C G T C T G A C G T A C G T A G C T A G C A T G C A T T C A G G T A C G C A T C A T G C G T A A T G C G C A T G C A T C A T G

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--VAGAAAGGCTGVCAGG
GGAAGGAAGGAAGGAAGG
 A C G T A C G T T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--VAGAAAGGCTGVCAGG
GGAACAAAGR--------
 A C G T A C G T T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--VAGAAAGGCTGVCAGG
VRRACAAWGG--------
 A C G T A C G T T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----VAGAAAGGCTGVCAGG
ATAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:VAGAAAGGCTGVCAGG
-ACAAAG---------
 T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----VAGAAAGGCTGVCAGG
AGAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T T A G C C G T A A T C G C G T A G T C A C G T A C A T G A C T G T G A C A G C T A C T G T A G C A T G C G T C A A C T G A C T G
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T