Information for 3-GRGSCTTTGCWCATTC (Motif 4)

A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
Reverse Opposite:
A T C G G C T A C T G A A G C T A C T G C G A T C T A G A G T C C G T A G T C A C G T A A T C G A T C G A G T C A G T C A G T C
p-value:1e-11
log p-value:-2.723e+01
Information Content per bp:1.738
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.4 +/- 20.7bp
Average Position of motif in Background38.0 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GRGSCTTTGCWCATTC
AGGVNCCTTTGT------
 A C G T A C G T A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GRGSCTTTGCWCATTC
--GGGATTGCATNN--
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GRGSCTTTGCWCATTC-
NNGTATGTGCACATNNN
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GRGSCTTTGCWCATTC
TGGACTTTGNNCTCN-
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GRGSCTTTGCWCATTC
---CCTTTGATCTTT-
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
A C G T A C G T A C G T A G T C A G T C C G A T A G C T G C A T A T C G T G C A G C A T T A G C G C A T G A C T G A C T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GRGSCTTTGCWCATTC
-----TATGCAAAT--
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GRGSCTTTGCWCATTC
---YCTTTGTTCC---
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GRGSCTTTGCWCATTC
GGGGATTTCC------
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GRGSCTTTGCWCATTC
---CCTTTGTT-----
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GRGSCTTTGCWCATTC
---CCWTTGTY-----
 A C T G C T A G A C T G A T G C A T G C C G A T A C G T A C G T A C T G A G T C C G T A T A G C C T G A A G C T C G A T T A G C
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T