Information for 5-TCTAAGCCCT (Motif 10)

A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
Reverse Opposite:
C T G A A C T G A C T G C T A G A G T C A G C T C G A T C G T A A C T G C G T A
p-value:1e-5
log p-value:-1.367e+01
Information Content per bp:1.855
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.84%
Number of Background Sequences with motif132.0
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets50.3 +/- 30.0bp
Average Position of motif in Background51.8 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TCTAAGCCCT
--TAATCCCN
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCTAAGCCCT
CTTAATCCC-
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCTAAGCCCT
GCTAATCC--
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCTAAGCCCT--
-CTAATCCTCTT
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T A C G T A C G T
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCTAAGCCCT
NYTAATCCYB
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCTAAGCCCT
-TTAATCCC-
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TCTAAGCCCT----
NTTGTTAATCCCTCTNN
 A C G T A C G T A C G T A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

RHOXF1/MA0719.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TCTAAGCCCT
-ATAATCCC-
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T

GSC/MA0648.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCTAAGCCCT
GCTAATCCCC
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCTAAGCCCT
-YTAATCCY-
 A C G T A G T C C G A T G C T A C T G A C T A G A G T C A G T C G T A C A G C T
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T