Information for 3-GCYTTCAGTSCTGYCC (Motif 6)

A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
Reverse Opposite:
C T A G C A T G T C G A G T A C C T G A T A C G T A C G T C G A A T G C C A G T A C T G G T C A T C G A C T G A C A T G G T A C
p-value:1e-8
log p-value:-1.898e+01
Information Content per bp:1.602
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif5.34%
Number of Background Sequences with motif338.9
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets43.6 +/- 21.1bp
Average Position of motif in Background50.4 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCYTTCAGTSCTGYCC
---TTAAGTGCTT---
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCYTTCAGTSCTGYCC--
-CGAACAGTGCTCACTAT
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C A C G T A C G T
A C G T A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GCYTTCAGTSCTGYCC
-----CNGTCCTCCC-
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
A C G T A C G T A C G T A C G T A C G T A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCYTTCAGTSCTGYCC
---TTAAGTGGT----
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GCYTTCAGTSCTGYCC
---TTRAGTGSYK---
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GCYTTCAGTSCTGYCC
--CTYRAGTGSY----
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GCYTTCAGTSCTGYCC
---TTAAGTGGN----
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T A C G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GCYTTCAGTSCTGYCC-
-CTTTAAGTACTTAATG
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C A C G T
A C G T G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.49
Offset:9
Orientation:forward strand
Alignment:GCYTTCAGTSCTGYCC
---------GCTGTG-
 A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--GCYTTCAGTSCTGYCC
NNNANTGCAGTGCNNTT-
 A C G T A C G T A C T G G A T C G A C T A G C T A C G T G T A C G C T A A T C G A G C T A T G C A T G C G A C T A C T G A G C T G T A C A G T C
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T