Information for 2-NGGCCCATTT (Motif 5)

T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T
Reverse Opposite:
T C G A T G C A C T G A A C G T A T C G C T A G A T C G G A T C G A T C A C G T
p-value:1e-8
log p-value:-1.941e+01
Information Content per bp:1.731
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif7.63%
Number of Background Sequences with motif732.7
Percentage of Background Sequences with motif1.48%
Average Position of motif in Targets42.3 +/- 24.9bp
Average Position of motif in Background49.5 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-NGGCCCATTT------
TGTTCCCATTGTGTACT
 A C G T T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:NGGCCCATTT--
--GGCCATTAAC
 T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

HLTF/MA0109.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:NGGCCCATTT--
--AACCTTATAT
 T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T

KLF13/MA0657.1/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----NGGCCCATTT---
ATGCCACGCCCCTTTTTG
 A C G T A C G T A C G T A C G T A C G T T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T A C G T A C G T A C G T
C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----NGGCCCATTT--
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A C G T T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

PB0137.1_Irf3_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-NGGCCCATTT---
NNGCACCTTTCTCC
 A C G T T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T A C G T A C G T A C G T
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

YY1/MA0095.2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:NGGCCCATTT--
GCNGCCATCTTG
 T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--NGGCCCATTT
TGGGGCCCAC--
 A C G T A C G T T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T
G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--NGGCCCATTT-----
NTCNTCCCCTATNNGNN
 A C G T A C G T T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:NGGCCCATTT
TGACCTARTT
 T G C A C T A G C T A G A T G C A G T C A T G C G T C A G A C T A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T