Information for 5-YGTACCCTGCTTC (Motif 10)

G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
Reverse Opposite:
C T A G C G T A T C G A C A T G G A T C C G T A A C T G A T C G C T A G A G C T G T C A T G A C C T G A
p-value:1e-6
log p-value:-1.546e+01
Information Content per bp:1.663
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.3 +/- 15.0bp
Average Position of motif in Background53.3 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:YGTACCCTGCTTC
--TGACCTARTT-
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:YGTACCCTGCTTC
-GTGACCTT----
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:YGTACCCTGCTTC--
-TTGACCTANTTATN
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:YGTACCCTGCTTC
--TGACCTYA---
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:YGTACCCTGCTTC----
-GAGCCCTTGTCCCTAA
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C A C G T A C G T A C G T A C G T
A C G T A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.57
Offset:5
Orientation:forward strand
Alignment:YGTACCCTGCTTC
-----GCTGTG--
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:YGTACCCTGCTTC
--TGACCTTGAT-
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:YGTACCCTGCTTC
--TGACCT-----
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:YGTACCCTGCTTC
-ACATCCTGNT--
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:YGTACCCTGCTTC
--TGCCCAGNHW-
 G A C T A C T G A C G T C T G A G A T C A T G C A G T C A C G T C A T G G T A C A G C T C G A T G A T C
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T