Information for 4-GTCTCYCAWTCAA (Motif 5)

A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
Reverse Opposite:
A C G T C G A T C T A G G T C A C G A T A C G T A C T G C T A G A C T G C G T A A C T G C G T A A G T C
p-value:1e-13
log p-value:-3.186e+01
Information Content per bp:1.872
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.8 +/- 22.1bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTCTCYCAWTCAA
TGTCTGDCACCT--
 A C G T A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTCTCYCAWTCAA
GSCTGTCACTCA-
 A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCTCYCAWTCAA
CTGTCTGTCACCT--
 A C G T A C G T A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTCTCYCAWTCAA
-NCTGTCAATCAN
 A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GTCTCYCAWTCAA
-----CCAATCAA
 A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTCTCYCAWTCAA
-SCTGTCAVTCAV
 A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTCTCYCAWTCAA-----
-CGACCCAATCAACGGTG
 A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GTCTCYCAWTCAA-
--CCATCAATCAAA
 A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A A C G T
A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTCTCYCAWTCAA
ACCACTCTCGGTCAC
 A C G T A C G T A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GTCTCYCAWTCAA
--CRCCCACGCA-
 A C T G A C G T A G T C A C G T A G T C A G C T A G T C C G T A C G A T A C G T A G T C C G T A C G T A
A C G T A C G T G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T