Information for 8-MAGARAGMTGMYY (Motif 13)

G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
Reverse Opposite:
T C A G T C G A A C T G A T G C G T C A A C G T A G T C G A C T G A C T A G C T A T G C C G A T A C T G
p-value:1e-4
log p-value:-1.129e+01
Information Content per bp:1.632
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif1099.6
Percentage of Background Sequences with motif2.24%
Average Position of motif in Targets55.9 +/- 22.5bp
Average Position of motif in Background49.4 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:MAGARAGMTGMYY
-ACAAAGGNBCCT
 G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:MAGARAGMTGMYY
-ACAAAG------
 G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------MAGARAGMTGMYY
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----MAGARAGMTGMYY
AAATAAGAAAAAAC---
 A C G T A C G T A C G T A C G T G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:MAGARAGMTGMYY-
--GWAAYHTGABMC
 G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---MAGARAGMTGMYY
AAACAGACAAAGGAAT
 A C G T A C G T A C G T G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--MAGARAGMTGMYY
GGAACAAAGR-----
 A C G T A C G T G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--MAGARAGMTGMYY
AAAACAAAGG-----
 A C G T A C G T G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-MAGARAGMTGMYY
CCAGACAG------
 A C G T G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--MAGARAGMTGMYY
VRRACAAWGG-----
 A C G T A C G T G T A C C G T A T A C G C T G A C T G A C T G A T C A G G T C A A C G T T A C G T G A C A G C T A G T C
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T