Information for 1-GGGGAGCCATTCA (Motif 5)

T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A
Reverse Opposite:
C G A T A C T G C T G A T C G A A C G T A C T G A C T G A G T C A C G T A T G C G T A C A T G C A G T C
p-value:1e-12
log p-value:-2.927e+01
Information Content per bp:1.773
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif5.77%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets50.9 +/- 18.1bp
Average Position of motif in Background70.0 +/- 5.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GGGGAGCCATTCA
-CGGAGC------
 T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A
A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GGGGAGCCATTCA-
----GGCCATTAAC
 T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A A C G T
A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GGGGAGCCATTCA
-ACTAGCCAATCA
 T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGGGAGCCATTCA
---CAGCC-----
 T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------GGGGAGCCATTCA-----
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GGGGAGCCATTCA--
----AGCCACTCAAG
 T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GGGGAGCCATTCA-
----AGCCAATCGG
 T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGGGAGCCATTCA-
--GCNGCCATCTTG
 T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A A C G T
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGGGAGCCATTCA
-GTCCGCCATTA-
 T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGGGAGCCATTCA-
AAATGGACCAATCAG
 A C G T T C A G A T C G A C T G T A C G C G T A T C A G A G T C G T A C G T C A A G C T G A C T T G A C C G T A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G