Information for 2-DTTACAAGGM (Motif 2)

C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A
Reverse Opposite:
C A G T A G T C G A T C G C A T C A G T C A T G C A G T T G C A G T C A G C T A
p-value:1e-14
log p-value:-3.343e+01
Information Content per bp:1.389
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif5.29%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets49.8 +/- 26.2bp
Average Position of motif in Background73.7 +/- 0.8bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:DTTACAAGGM
---ACAAAG-
 C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A
A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---DTTACAAGGM
GNCTATAAAAGG-
 A C G T A C G T A C G T C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

HLTF/MA0109.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:DTTACAAGGM-
-NNATAAGGNN
 C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A A C G T
A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:DTTACAAGGM-----
---ACAAAGGNBCCT
 C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.68
Offset:4
Orientation:forward strand
Alignment:DTTACAAGGM----
----CAAGGHCANV
 C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:DTTACAAGGM
VRRACAAWGG
 C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--DTTACAAGGM
NTTTTACGAGN-
 A C G T A C G T C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----DTTACAAGGM--
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:DTTACAAGGM--
--NTCAAGGTCA
 C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A A C G T A C G T
A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:DTTACAAGGM
--RACAAWGG
 C G A T C A G T A C G T G T C A G T A C G T C A C G T A C T A G T C A G G T C A
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G