Information for 1-GAGGCTGCAAGGT (Motif 2)

A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T
Reverse Opposite:
C G T A A G T C A G T C A G C T A G C T C T A G A G T C C G T A A C T G A G T C A G T C C G A T A G T C
p-value:1e-10
log p-value:-2.471e+01
Information Content per bp:1.836
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.34%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets64.8 +/- 33.8bp
Average Position of motif in Background56.7 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL002.1_INR/Jaspar

Match Rank:1
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAGGCTGCAAGGT
NNNANTGA-----
 A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGGCTGCAAGGT
TWGTCTGV-----
 A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:3
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GAGGCTGCAAGGT-------
---TATTCAAGGTCATGCGA
 A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAGGCTGCAAGGT
NATGTTGCAA---
 A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GAGGCTGCAAGGT
-MTGATGCAAT--
 A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T
A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GAGGCTGCAAGGT
-ATGATGCAAT--
 A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T
A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:7
Score:0.49
Offset:5
Orientation:forward strand
Alignment:GAGGCTGCAAGGT---
-----TTCAAGGTCAT
 A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

ATF4/MA0833.1/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-GAGGCTGCAAGGT
GGATGATGCAATA-
 A C G T A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T
C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GAGGCTGCAAGGT
ARGAGGMCAAAATGW
 A C G T A C G T A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:10
Score:0.48
Offset:2
Orientation:reverse strand
Alignment:GAGGCTGCAAGGT----
--KGTTGCTAGGMAACA
 A C T G C G T A A C T G C T A G G T A C A C G T A C T G A G T C C T G A C T G A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A