Information for 6-CACAGGAGAAGCA (Motif 7)

A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
Reverse Opposite:
A C G T A T C G A T G C G A C T A C G T A G T C A C G T A T G C A G T C A C G T A T C G C A G T A C T G
p-value:1e-10
log p-value:-2.347e+01
Information Content per bp:1.830
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif12.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets49.8 +/- 23.7bp
Average Position of motif in Background44.6 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CACAGGAGAAGCA
CACAGCAGGGGG-
 A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACAGGAGAAGCA
CACAGN-------
 A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CACAGGAGAAGCA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CACAGGAGAAGCA
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CACAGGAGAAGCA
--CAGGTGAGG--
 A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CACAGGAGAAGCA-
DCHCAGCAGGRGGCC
 A C G T A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CACAGGAGAAGCA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CACAGGAGAAGCA
NACAGGAAAT---
 A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CACAGGAGAAGCA
AACAGGAAGT---
 A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CACAGGAGAAGCA
NACAGGAAAT---
 A G T C G C T A A T G C C G T A A C T G A T C G C G T A A C T G T C G A C T G A A T C G A T G C C G T A
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T