Information for 11-CCAAGGAAACCCC (Motif 15)

A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A C T G A C G T A C G T A C G T A G T C A G T C A C G T A C G T A C T G A T C G
p-value:1e-8
log p-value:-1.946e+01
Information Content per bp:1.940
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 29.2bp
Average Position of motif in Background39.2 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:CCAAGGAAACCCC-
----GGAAANCCCC
 A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CCAAGGAAACCCC-
----GGAAATTCCC
 A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:CCAAGGAAACCCC-
----GGAAATCCCC
 A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCAAGGAAACCCC--
---GGGAAATCCCCN
 A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0201.1_Zfp281_2/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCAAGGAAACCCC-------
---AGGAGACCCCCAATTTG
 A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCAAGGAAACCCC
TTGCCATGGCAACC--
 A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAAGGAAACCCC----
NNNNGGTACCCCCCANN
 A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C A C G T A C G T A C G T A C G T
G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CCAAGGAAACCCC-
----GGAAATTCCC
 A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCAAGGAAACCCC
-GGGGGAATCCCC
 A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCAAGGAAACCCC
TTGCCATGGCAACN--
 A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C T G A C T G C G T A C G T A G T C A A G T C A G T C A G T C A G T C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T