Information for 2-GSRCYTKTCY (Motif 5)

A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C
Reverse Opposite:
T C A G T C A G T G C A T G A C C G T A T C A G C A T G A G T C T A C G T G A C
p-value:1e-12
log p-value:-2.848e+01
Information Content per bp:1.479
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif3.97%
Number of Background Sequences with motif429.7
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets47.9 +/- 26.3bp
Average Position of motif in Background49.2 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GSRCYTKTCY
NCCATTGTTY
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

Sox6/MA0515.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GSRCYTKTCY-
-CCATTGTTTT
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C A C G T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GSRCYTKTCY
NCCATTGTTC
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GSRCYTKTCY-
-CCATTGTTNY
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GSRCYTKTCY--
GGNGCGNCTGTTNNN
 A C G T A C G T A C G T A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GSRCYTKTCY-
-CCWTTGTYYB
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C A C G T
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GSRCYTKTCY
-CCWTTGTY-
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GSRCYTKTCY
---GCTGTG-
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GSRCYTKTCY-
-CCTTTGTTTT
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GSRCYTKTCY-
-YCTTTGTTCC
 A C T G A T G C T C A G G T A C A G T C G C A T A C T G A C G T A G T C A G T C A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C