Information for 1-AGAGGCTGCC (Motif 4)

G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C
Reverse Opposite:
T A C G A T C G G T A C T G C A A C T G G A T C G A T C G C A T A G T C C A G T
p-value:1e-12
log p-value:-2.858e+01
Information Content per bp:1.691
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif8.17%
Number of Background Sequences with motif1508.3
Percentage of Background Sequences with motif3.17%
Average Position of motif in Targets44.0 +/- 25.1bp
Average Position of motif in Background50.8 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGAGGCTGCC
---NGCTN--
 G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGAGGCTGCC-----
AGATGCTRCTRCCHT
 G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C A C G T A C G T A C G T A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGAGGCTGCC----
-----CTGCCCGCA
 G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Mafb/MA0117.2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAGGCTGCC-
AAAATGCTGACT
 A C G T G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C A C G T
C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGAGGCTGCC
-TWGTCTGV-
 G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

POL002.1_INR/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGAGGCTGCC
-NNNANTGA-
 G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C
A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAGGCTGCC
AGCAGCTGCT
 G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AGAGGCTGCC---
---TGCTGACTCA
 G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGAGGCTGCC---
---VGCTGWCAVB
 G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGCTGCC
NNAGCAGCTGCT
 A C G T A C G T G T C A T C A G C G T A C T A G C T A G T G A C A C G T A C T G T A G C A T G C
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T