Information for 3-KTCCTTAAGGRACAGG (Motif 3)

A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
Reverse Opposite:
A T G C A G T C A C G T A C T G C A G T A G T C G T A C A G T C A G C T A G C T C G T A C G T A C A T G C T A G C G T A G T A C
p-value:1e-13
log p-value:-3.038e+01
Information Content per bp:1.765
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.5 +/- 12.1bp
Average Position of motif in Background71.3 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:KTCCTTAAGGRACAGG-
-----TGAGTGACAGSC
 A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:KTCCTTAAGGRACAGG
----NTGATTGACAGN
 A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:KTCCTTAAGGRACAGG
----BTGABTGACAGS
 A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

NKX6-1/MA0674.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:KTCCTTAAGGRACAGG
GTAATTAA--------
 A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0153.1_Prop1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----KTCCTTAAGGRACAGG
CGAATTAATTAAGAAAC---
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
T G A C T C A G T G C A T C G A G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A C T G C G T A C G T A C T G A G A T C A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:KTCCTTAAGGRACAGG
---CTYRAGTGSY---
 A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

EMX1/MA0612.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-KTCCTTAAGGRACAGG
NNTAATTAGN-------
 A C G T A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
T C A G A T C G G A C T G T C A G C T A G C A T A G C T C T G A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0055.1_Hoxa7_2/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---KTCCTTAAGGRACAGG
GTAGTAATTAATGGAA---
 A C G T A C G T A C G T A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
A C T G A C G T T G C A A C T G G C A T G T C A C G T A A C G T C A G T C G T A T G C A A C G T T C A G A T C G G T C A T G C A A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:9
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:KTCCTTAAGGRACAGG
----TTAAGTGGN---
 A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T

VAX2/MA0723.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:KTCCTTAAGGRACAGG
NTAATTAG--------
 A C T G A C G T A G T C G T A C A C G T A C G T C T G A C T G A A C T G C A T G C T A G G C T A A G T C C G T A C T A G A T C G
T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T