Information for 5-CTAAGTGCTT (Motif 9)

T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T
Reverse Opposite:
C G T A T G C A C T A G A G T C C G T A A G T C G A C T C G A T C G T A A C T G
p-value:1e-4
log p-value:-1.131e+01
Information Content per bp:1.675
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif10.48%
Number of Background Sequences with motif1799.0
Percentage of Background Sequences with motif3.68%
Average Position of motif in Targets40.7 +/- 23.7bp
Average Position of motif in Background49.6 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:CTAAGTGCTT
TTAAGTGCTT
 T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

ISL2/MA0914.1/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CTAAGTGCTT
TTAAGTGC--
 T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CTAAGTGCTT
TTAAGTGGN-
 T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTAAGTGCTT
TTAAGTGGT-
 T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----CTAAGTGCTT---
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T A C G T T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PH0117.1_Nkx3-1/Jaspar

Match Rank:6
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTAAGTGCTT----
NATTTAAGTACTTANNA
 A C G T A C G T A C G T T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTAAGTGCTT
TTRAGTGSYK
 T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

PH0112.1_Nkx2-3/Jaspar

Match Rank:8
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTAAGTGCTT----
CNTTAAGTACTTAANG
 A C G T A C G T T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T A C G T A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTAAGTGCTT
CTAATKGV--
 T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTAAGTGCTT---
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T T G A C G C A T G C T A C T G A C T A G C G A T T C A G G A T C A C G T G C A T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G