Information for 6-TATGCAGTAGGTC (Motif 8)

A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C
Reverse Opposite:
C A T G G T C A G A T C A T G C A G C T G T C A G T A C C G A T A C T G A G T C G T C A A G C T G T C A
p-value:1e-6
log p-value:-1.531e+01
Information Content per bp:1.698
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif94.7
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets44.4 +/- 23.7bp
Average Position of motif in Background47.5 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TATGCAGTAGGTC-
----AAYTAGGTCA
 A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T
A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TATGCAGTAGGTC--
-TATAAGTAGGTCAA
 A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T A C G T
A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TATGCAGTAGGTC--
NNAGGGACAAGGGCNC
 A C G T A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PB0051.1_Osr2_1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TATGCAGTAGGTC--
ATGTACAGTAGCAAAG
 A C G T A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TATGCAGTAGGTC-
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TATGCAGTAGGTC--
ATTTACAGTAGCAAAA
 A C G T A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.52
Offset:8
Orientation:forward strand
Alignment:TATGCAGTAGGTC-
--------AGGTCA
 A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

PB0150.1_Mybl1_2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TATGCAGTAGGTC-
CACGGCAGTTGGTNN
 A C G T A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.51
Offset:-8
Orientation:forward strand
Alignment:--------TATGCAGTAGGTC
SMCAGTCWGAKGGAGGAGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TATGCAGTAGGTC-
----ATCAAGGTCA
 A C G T C T G A A C G T T A C G T G A C C G T A A C T G C A G T C T G A A T C G C A T G C A G T G A T C A C G T
A C G T A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A