Information for 4-CAAGCATCAG (Motif 7)

A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G C T G A C G A T A C T G A G T C G C A T A C G T A C T G
p-value:1e-6
log p-value:-1.565e+01
Information Content per bp:1.861
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif3.81%
Number of Background Sequences with motif134.9
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets44.6 +/- 23.3bp
Average Position of motif in Background48.3 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAAGCATCAG
CAAGCTT---
 A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAAGCATCAG--
TTCACGCATGAGTT
 A C G T A C G T A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX1/MA0779.1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAAGCATCAG----
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

SCRT2/MA0744.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAAGCATCAG----
-ATGCAACAGGTGG
 A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAAGCATCAG
CACGCA----
 A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAAGCATCAG----
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAAGCATCAG------
TCACCCATCAATAAACA
 A C G T A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAAGCATCAG---
--AGCCTCAGGCA
 A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A

SCRT1/MA0743.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAAGCATCAG------
-GAGCAACAGGTGGTT
 A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAAGCATCAG---
--NGCCTNAGGCN
 A G T C G T C A C G T A A C T G A G T C G C T A A G C T A T G C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T