Information for 6-GCAGCAGGAGAMWGGA (Motif 6)

A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
Reverse Opposite:
G A C T G T A C G T A C C G A T A C T G A G C T A G T C A C G T G T A C A G T C A C G T A C T G A T G C A G C T A C T G A T G C
p-value:1e-11
log p-value:-2.703e+01
Information Content per bp:1.701
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif4.18%
Number of Background Sequences with motif83.1
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets31.8 +/- 18.2bp
Average Position of motif in Background50.7 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGGAGAMWGGA
CCACACAGCAGGAGA-----
 A C G T A C G T A C G T A C G T A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGGAGAMWGGA
CCACACAGCAGGAGA-----
 A C G T A C G T A C G T A C G T A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGGAGAMWGGA
GAGCACAGCAGGACA-----
 A C G T A C G T A C G T A C G T A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGGAGAMWGGA
CACAGCAGGGGG-----
 A C G T A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCAGCAGGAGAMWGGA
--ANCAGGATGT----
 A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCAGCAGGAGAMWGGA
DCHCAGCAGGRGGCC---
 A C G T A C G T A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAGCAGGAGAMWGGA
--NDCAGGAARTNN--
 A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
A C G T A C G T T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GCAGCAGGAGAMWGGA----
------GGAGAAAGGTGCGA
 A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCAGCAGGAGAMWGGA
--NACAGGAAAT----
 A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCAGCAGGAGAMWGGA
--NACAGGAAAT----
 A T C G G T A C C T G A A T C G G T A C C G T A C T A G A C T G C G T A A C T G T C G A G T A C C G T A A C T G A C T G C T G A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T