Information for 3-ADGCCTGGATGCACAC (Motif 5)

G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C
Reverse Opposite:
A T C G C G A T A C T G A C G T A C T G A T G C C G T A A C G T A G T C G T A C C G T A A T C G A C T G A G T C G T A C A C G T
p-value:1e-14
log p-value:-3.302e+01
Information Content per bp:1.754
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.6 +/- 23.0bp
Average Position of motif in Background54.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXH1/MA0479.1/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:ADGCCTGGATGCACAC
----TCCAATCCACA-
 G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C
A C G T A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:ADGCCTGGATGCACAC-----
-----NNTTTGCACACGGCCC
 G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ADGCCTGGATGCACAC
GTCATGCHTGRCTGS----
 A C G T A C G T A C G T G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:ADGCCTGGATGCACAC-
-----SSAATCCACANN
 G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.57
Offset:6
Orientation:forward strand
Alignment:ADGCCTGGATGCACAC------
------AGCGGCACACACGCAA
 G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ADGCCTGGATGCACAC-
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ADGCCTGGATGCACAC
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A C G T G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----ADGCCTGGATGCACAC
NGTCACGCTTGGCTGC----
 A C G T A C G T A C G T A C G T G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ADGCCTGGATGCACAC---
--NTNTATGTGCACATNNN
 G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C A C G T A C G T A C G T
A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:ADGCCTGGATGCACAC------
------CGAAGCACACAAAATA
 G T C A C A G T A C T G T A G C T A G C C G A T A C T G C T A G G T C A A C G T A T C G G T A C C G T A A G T C C G T A T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A