Information for 9-CTGRMTGGCC (Motif 29)

G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C
Reverse Opposite:
A T C G A C T G A G T C A T G C T C G A A C T G A G T C A G T C C G T A C A T G
p-value:1e-6
log p-value:-1.505e+01
Information Content per bp:1.738
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif5.91%
Number of Background Sequences with motif489.2
Percentage of Background Sequences with motif1.62%
Average Position of motif in Targets45.3 +/- 27.2bp
Average Position of motif in Background51.5 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGRMTGGCC--
BTGABTGACAGS
 G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGRMTGGCC---
-TGATTGGCTANN
 G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTGRMTGGCC--
NTGATTGACAGN
 G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGRMTGGCC-----
CTGATTGGTCNATTT
 G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CTGRMTGGCC--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGRMTGGCC
CTGTCTGG--
 G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGRMTGGCC---
CTGTCTGTCACCT
 G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTGRMTGGCC---
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTGRMTGGCC----
NGTAGGTTGGCATNNN
 A C G T A C G T G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGRMTGGCC
CCGATTGGCT
 G T A C C G A T A C T G T C A G G T A C A G C T A T C G C T A G G T A C T A G C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T