Information for 1-CCCTCAGTGARAA (Motif 1)

A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A
Reverse Opposite:
A G C T A C G T A G C T A C G T A G T C C G T A A G T C C G A T A C T G C G T A A C T G C A T G A C T G
p-value:1e-20
log p-value:-4.626e+01
Information Content per bp:1.856
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif2.42%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 19.3bp
Average Position of motif in Background75.5 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCCTCAGTGARAA
AASCACTCAA------
 A C G T A C G T A C G T A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CCCTCAGTGARAA
AGCCACTCAAG-----
 A C G T A C G T A C G T A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCCTCAGTGARAA
MRSCACTYAA------
 A C G T A C G T A C G T A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CCCTCAGTGARAA
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CCCTCAGTGARAA
----NCGTGACN-
 A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A
A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CCCTCAGTGARAA---
CAATCACTGGCAGAAT
 A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CCCTCAGTGARAA--
---TGAGTGACAGSC
 A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A A C G T A C G T
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCCTCAGTGARAA-
--GAAAGTGAAAGT
 A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A A C G T
A C G T A C G T T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCCTCAGTGARAA
CCTGCTGAGH---
 A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CCCTCAGTGARAA-
------TTGACAGG
 A G T C G T A C A G T C A C G T A G T C C G T A C T A G A C G T A C T G C G T A T C G A G T C A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G