Information for 3-WGAMRGCAGAGGGCGC (Motif 5)

C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C
Reverse Opposite:
T A C G T A G C A C T G G T A C A G T C A G T C A C G T A G T C A C G T A C T G A G T C A G T C A C G T A G C T A G T C G C A T
p-value:1e-13
log p-value:-3.058e+01
Information Content per bp:1.722
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.4 +/- 20.4bp
Average Position of motif in Background55.2 +/- 17.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:WGAMRGCAGAGGGCGC
----AACAGATGGC--
 C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C
A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:WGAMRGCAGAGGGCGC-----
-GCCASCAGGGGGCGCYVNNG
 C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------WGAMRGCAGAGGGCGC
SMCAGTCWGAKGGAGGAGGC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-WGAMRGCAGAGGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:WGAMRGCAGAGGGCGC
----AACAGATGGT--
 C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C
A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:WGAMRGCAGAGGGCGC
AGGGGTCAGAGGTCA-
 C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:WGAMRGCAGAGGGCGC
-TAGGGCAAAGGTCA-
 C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C
A C G T A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:WGAMRGCAGAGGGCGC--
-AAGGCCAGATGGTCCGG
 C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C A C G T A C G T
A C G T G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-WGAMRGCAGAGGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:WGAMRGCAGAGGGCGC----
---NNNAAGGGGGCGGGNNN
 C G T A A C T G C T G A G T C A C T A G C T A G T A G C C G T A A C T G C G T A C T A G C T A G A C T G T G A C A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C