Information for 16-TGGCAGAGAG (Motif 13)

A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G
Reverse Opposite:
G T A C C A G T A G T C A C G T A G T C C A G T A C T G A T G C A T G C C G T A
p-value:1e-10
log p-value:-2.334e+01
Information Content per bp:1.862
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.33%
Number of Background Sequences with motif347.1
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets50.9 +/- 23.3bp
Average Position of motif in Background48.6 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGGCAGAGAG----
NNNACCGAGAGTNNN
 A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGAGAG
CTTGGCAA----
 A C G T A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGAGAG
TTGGCA-----
 A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGAGAG
NTTGGCANN---
 A C G T A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGAGAG
AGGTGNCAGACAG
 A C G T A C G T A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TGGCAGAGAG--
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G A C G T A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGAGAG
NNTTGGCANN---
 A C G T A C G T A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGGCAGAGAG--
--GCAGTGATTT
 A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G A C G T A C G T
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGAGAG
AGGTGHCAGACA-
 A C G T A C G T A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGAGAG
VBTGWCAGCB--
 A C G T A C G T A C G T A T C G A T C G A G T C G T C A A C T G G T C A A C T G G T C A A C T G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T