Information for 6-TTMCCACTKT (Motif 31)

A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T
Reverse Opposite:
C G T A G T C A G C T A A C T G A C G T A C T G A C T G A C G T C G T A C G T A
p-value:1e-7
log p-value:-1.665e+01
Information Content per bp:1.759
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.18%
Number of Background Sequences with motif336.5
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets54.5 +/- 21.8bp
Average Position of motif in Background51.2 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TTMCCACTKT
HTTTCCCASG--
 A C G T A C G T A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T
G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TTMCCACTKT-
--ACCACTTAA
 A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T A C G T
A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TTMCCACTKT-----
CATAACCACTTAACAAC
 A C G T A C G T A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTMCCACTKT
TTMACACCTT
 A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T
C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

NKX3-2/MA0122.2/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TTMCCACTKT-
--ACCACTTAA
 A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T A C G T
A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTMCCACTKT-----
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTMCCACTKT
ATTTTCCATT--
 A C G T A C G T A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTMCCACTKT
ATTTTCCATT--
 A C G T A C G T A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTMCCACTKT--
--ACCACTTGAA
 A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T A C G T A C G T
A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTMCCACTKT
ATTAACACCT-
 A C G T A C G T C G A T T G C A G T A C A G T C C G T A T G A C C G A T A C G T C G A T
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T