Information for 2-CGGARACCCCAGGRGA (Motif 2)

A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A T G C A G T C A G C T C T A G A C T G A C T G A T C G A G C T A G T C A C G T A G T C A G T C A T C G
p-value:1e-12
log p-value:-2.948e+01
Information Content per bp:1.828
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.6 +/- 23.1bp
Average Position of motif in Background46.5 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CGGARACCCCAGGRGA
----GTCCCCAGGGGA
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A
A C G T A C G T A C G T A C G T C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:2
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CGGARACCCCAGGRGA--
------TCCCNNGGGACN
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGGARACCCCAGGRGA
-GGAAANCCCC-----
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CGGARACCCCAGGRGA--
---ACCCCCCCGGGGGGN
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGGARACCCCAGGRGA
-GGAAATTCCC-----
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T A C G T

EBF1/MA0154.3/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CGGARACCCCAGGRGA--
----ATTCCCAAGGGAAT
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGGARACCCCAGGRGA
GGGGGAATCCCC------
 A C G T A C G T A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CGGARACCCCAGGRGA--
---NCCCCCCCGGGGGGN
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGARACCCCAGGRGA
-GGAAATCCCC-----
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CGGARACCCCAGGRGA--
----CACCCCCGGGGGGG
 A T G C A C T G A C T G G T C A T C A G C T G A A T G C A G T C A G T C A G T C C T G A A C T G A T C G C T A G A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G