Information for 5-CAGCACCTTGGACAGT (Motif 5)

A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T
Reverse Opposite:
C T G A A G T C A C G T A T C G C A G T A G T C A G T C C G T A C T G A C T A G A C T G A C G T A T C G A G T C A C G T A C T G
p-value:1e-16
log p-value:-3.911e+01
Information Content per bp:1.856
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.3 +/- 11.0bp
Average Position of motif in Background54.3 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCTTGGACAGT---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CAGCACCTTGGACAGT---
TCAGCACCATGGACAGCTCC
 A C G T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGCACCTTGGACAGT-
-TGGACTTTGNNCTNTG
 A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CAGCACCTTGGACAGT
-TGGACTTTGNNCTCN
 A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CAGCACCTTGGACAGT
NNNNATGACCTTGANTN--
 A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CAGCACCTTGGACAGT
-ATGACCTTGAA----
 A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T
A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:7
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CAGCACCTTGGACAGT
NGTCAGCANTTT-------
 A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:8
Score:0.51
Offset:-6
Orientation:forward strand
Alignment:------CAGCACCTTGGACAGT
CTGAGTCAGCAATTT-------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CAGCACCTTGGACAGT
GTCAGCANNTN-------
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------CAGCACCTTGGACAGT
NCTANGTCAGCAAATTT------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A A G T C A G T C G A C T G C A T A C T G A C T G G T C A A T G C C G T A A C T G G A C T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T