Information for 11-GCCAAAGCAA (Motif 25)

T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
Reverse Opposite:
A G C T A C G T A T C G A T G C A G C T A C G T A C G T A C T G A C T G A G T C
p-value:1e-7
log p-value:-1.806e+01
Information Content per bp:1.791
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif146.7
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets54.3 +/- 27.9bp
Average Position of motif in Background45.8 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAAGCAA-----
TGCCAAAATAAACANN
 A C G T T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GCCAAAGCAA-
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T A C G T T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAAGCAA
TGCCAA-----
 A C G T T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GCCAAAGCAA
RACAAWGG--
 T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGCAA
CGTGCCAAG----
 A C G T A C G T A C G T T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCCAAAGCAA
VRRACAAWGG--
 A C G T A C G T T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCCAAAGCAA
GGAACAAAGR--
 A C G T A C G T T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCCAAAGCAA
AAAACAAAGG--
 A C G T A C G T T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCCAAAGCAA
-ACAAAG---
 T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGCAA
GGTGCCAAGT---
 A C G T A C G T A C G T T C A G T G A C A G T C C G T A C G T A T C G A T A C G A T G C G T C A C T G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T