Information for 15-TGGCAGGGAGCCA (Motif 26)

A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G A G T C A G C T A G T C G T A C A G T C C A G T A C T G A G T C A G T C T C G A
p-value:1e-7
log p-value:-1.714e+01
Information Content per bp:1.842
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif52.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets71.8 +/- 17.9bp
Average Position of motif in Background48.5 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGGCAGGGAGCCA-
TGGCAGNCTGCCAG
 A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGGCAGGGAGCCA-
TGGCACCATGCCAA
 A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TGGCAGGGAGCCA--
TTGGCANNNTGCCAAG
 A C G T A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A A C G T A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:TGGCAGGGAGCCA
-----CGGAGC--
 A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGGGAGCCA
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TGGCAGGGAGCCA
----AGCGCGCC-
 A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A
A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.59
Offset:6
Orientation:forward strand
Alignment:TGGCAGGGAGCCA--
------CGTGCCAAG
 A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGGGAGCCA
CACAGCGGGGGGTC-
 A C G T A C G T A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGGGAGCCA
NCNCAGCGGGGGGTC-
 A C G T A C G T A C G T A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.58
Offset:8
Orientation:reverse strand
Alignment:TGGCAGGGAGCCA-
--------TGCCAA
 A G C T T A C G A C T G A G T C G T C A A C T G A C T G A C T G C T G A A C T G A G T C A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A