Information for 2-NHTTDCCATATAWGGA (Motif 2)

A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A
Reverse Opposite:
C G A T A G T C A G T C C G A T C G A T C G T A G C A T C G T A C G A T C T A G A C T G G C T A T G C A C G T A C G A T T G C A
p-value:1e-85
log p-value:-1.962e+02
Information Content per bp:1.595
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif9.63%
Number of Background Sequences with motif153.2
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets49.6 +/- 15.0bp
Average Position of motif in Background55.2 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:1
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:NHTTDCCATATAWGGA
---TNCCATATATGG-
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A
A C G T A C G T A C G T C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T

PB0078.1_Srf_1/Jaspar

Match Rank:2
Score:0.95
Offset:3
Orientation:reverse strand
Alignment:NHTTDCCATATAWGGA-
---TNCCATATATGGNA
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A A C G T
A C G T A C G T A C G T C A G T C G A T G T A C A G T C C G T A C G A T C G T A G C A T C G T A C G A T C T A G C A T G C G T A C G T A

MF0008.1_MADS_class/Jaspar

Match Rank:3
Score:0.89
Offset:5
Orientation:reverse strand
Alignment:NHTTDCCATATAWGGA
-----CCATATATGG-
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A
A C G T A C G T A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T

SRF/MA0083.3/Jaspar

Match Rank:4
Score:0.86
Offset:2
Orientation:forward strand
Alignment:NHTTDCCATATAWGGA--
--TGACCATATATGGTCA
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A A C G T A C G T
A C G T A C G T G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:NHTTDCCATATAWGGA
---GNCTATAAAAGG-
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A
A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:6
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:NHTTDCCATATAWGGA
----KCCAAAAATAGC
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A
A C G T A C G T A C G T A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

HLTF/MA0109.1/Jaspar

Match Rank:7
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:NHTTDCCATATAWGGA-
-------NNATAAGGNN
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:NHTTDCCATATAWGGA
-----CCAAAAATAG-
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A
A C G T A C G T A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:NHTTDCCATATAWGGA----
-----GTATAAAAGGCGGGG
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:NHTTDCCATATAWGGA----
-----GTATAAAAGGCGGGG
 A C G T G C A T G C A T A C G T C G A T A G T C A G T C G C T A G C A T C G T A C G A T G C T A C G T A C T A G A C T G G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G