Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 812)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47435)	% of Background Sequences with Motif
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-156	-3.601e+02	0.0000	228.0	28.08%	1285.5	2.71%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-83	-1.930e+02	0.0000	161.0	19.83%	1328.5	2.80%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-75	-1.743e+02	0.0000	89.0	10.96%	312.1	0.66%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-59	-1.378e+02	0.0000	91.0	11.21%	514.1	1.08%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-38	-8.845e+01	0.0000	250.0	30.79%	6227.8	13.13%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-31	-7.319e+01	0.0000	64.0	7.88%	546.2	1.15%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-29	-6.894e+01	0.0000	76.0	9.36%	857.8	1.81%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-29	-6.778e+01	0.0000	72.0	8.87%	779.3	1.64%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-28	-6.459e+01	0.0000	74.0	9.11%	870.1	1.83%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-27	-6.347e+01	0.0000	80.0	9.85%	1038.4	2.19%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-27	-6.237e+01	0.0000	79.0	9.73%	1030.4	2.17%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-26	-6.089e+01	0.0000	51.0	6.28%	412.5	0.87%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-23	-5.356e+01	0.0000	81.0	9.98%	1245.7	2.63%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-18	-4.302e+01	0.0000	15.0	1.85%	22.9	0.05%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.514e+01	0.0000	28.0	3.45%	330.1	0.70%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-10	-2.484e+01	0.0000	79.0	9.73%	2014.0	4.25%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-9	-2.206e+01	0.0000	35.0	4.31%	574.4	1.21%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-9	-2.162e+01	0.0000	153.0	18.84%	5406.7	11.40%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-7	-1.792e+01	0.0000	69.0	8.50%	1939.1	4.09%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-7	-1.768e+01	0.0000	57.0	7.02%	1475.7	3.11%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-6	-1.579e+01	0.0000	62.0	7.64%	1764.1	3.72%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-6	-1.524e+01	0.0000	50.0	6.16%	1313.4	2.77%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-6	-1.501e+01	0.0000	46.0	5.67%	1169.1	2.46%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-6	-1.485e+01	0.0000	53.0	6.53%	1449.5	3.06%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-6	-1.460e+01	0.0000	169.0	20.81%	6826.0	14.39%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-6	-1.424e+01	0.0000	44.0	5.42%	1126.4	2.37%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-5	-1.342e+01	0.0000	90.0	11.08%	3132.1	6.60%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-5	-1.339e+01	0.0000	20.0	2.46%	325.2	0.69%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.318e+01	0.0000	94.0	11.58%	3335.7	7.03%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-5	-1.313e+01	0.0000	99.0	12.19%	3571.9	7.53%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-5	-1.299e+01	0.0000	9.0	1.11%	64.7	0.14%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-5	-1.251e+01	0.0000	90.0	11.08%	3205.7	6.76%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-5	-1.222e+01	0.0001	76.0	9.36%	2589.7	5.46%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-5	-1.220e+01	0.0001	51.0	6.28%	1506.1	3.18%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-5	-1.215e+01	0.0001	95.0	11.70%	3468.5	7.31%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-5	-1.175e+01	0.0001	82.0	10.10%	2898.2	6.11%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-5	-1.170e+01	0.0001	195.0	24.01%	8508.2	17.94%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-5	-1.160e+01	0.0001	202.0	24.88%	8889.7	18.74%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-5	-1.159e+01	0.0001	70.0	8.62%	2367.0	4.99%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-5	-1.153e+01	0.0001	9.0	1.11%	77.9	0.16%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-5	-1.153e+01	0.0001	9.0	1.11%	77.2	0.16%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-4	-1.127e+01	0.0001	131.0	16.13%	5297.3	11.17%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-4	-1.108e+01	0.0001	44.0	5.42%	1279.4	2.70%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-4	-1.102e+01	0.0001	87.0	10.71%	3192.7	6.73%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-4	-1.086e+01	0.0002	109.0	13.42%	4260.0	8.98%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-4	-1.084e+01	0.0002	56.0	6.90%	1801.7	3.80%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-4	-1.051e+01	0.0002	93.0	11.45%	3523.7	7.43%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-9.960e+00	0.0004	102.0	12.56%	4012.9	8.46%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-4	-9.636e+00	0.0005	108.0	13.30%	4341.7	9.15%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-3	-9.205e+00	0.0007	46.0	5.67%	1475.7	3.11%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-3	-9.162e+00	0.0007	99.0	12.19%	3952.0	8.33%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-3	-8.848e+00	0.0010	19.0	2.34%	415.1	0.88%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-8.431e+00	0.0015	12.0	1.48%	199.5	0.42%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-8.431e+00	0.0015	76.0	9.36%	2913.2	6.14%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-8.175e+00	0.0019	116.0	14.29%	4917.3	10.37%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-3	-8.175e+00	0.0019	176.0	21.67%	8032.8	16.94%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-3	-8.172e+00	0.0019	33.0	4.06%	986.6	2.08%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-8.073e+00	0.0020	306.0	37.68%	15155.4	31.95%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-7.938e+00	0.0022	61.0	7.51%	2250.5	4.74%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-3	-7.913e+00	0.0022	64.0	7.88%	2393.1	5.05%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-3	-7.860e+00	0.0023	10.0	1.23%	153.5	0.32%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-7.843e+00	0.0023	43.0	5.30%	1437.8	3.03%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-7.695e+00	0.0026	13.0	1.60%	248.8	0.52%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-3	-7.671e+00	0.0027	68.0	8.37%	2606.8	5.50%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-7.641e+00	0.0027	32.0	3.94%	975.9	2.06%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-3	-7.536e+00	0.0029	44.0	5.42%	1504.8	3.17%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-3	-7.456e+00	0.0031	32.0	3.94%	986.5	2.08%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-7.188e+00	0.0040	73.0	8.99%	2897.5	6.11%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-3	-6.978e+00	0.0049	29.0	3.57%	888.4	1.87%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.699e+00	0.0064	39.0	4.80%	1343.2	2.83%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-6.665e+00	0.0065	164.0	20.20%	7652.5	16.13%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-6.479e+00	0.0078	19.0	2.34%	507.4	1.07%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-6.422e+00	0.0081	81.0	9.98%	3381.7	7.13%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-6.401e+00	0.0082	36.0	4.43%	1231.4	2.60%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-6.380e+00	0.0082	6.0	0.74%	72.3	0.15%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-6.279e+00	0.0090	5.0	0.62%	50.4	0.11%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-6.237e+00	0.0092	28.0	3.45%	891.5	1.88%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-6.095e+00	0.0105	206.0	25.37%	10035.1	21.16%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-6.002e+00	0.0114	69.0	8.50%	2836.0	5.98%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.973e+00	0.0116	38.0	4.68%	1355.4	2.86%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-5.973e+00	0.0116	43.0	5.30%	1586.6	3.35%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-5.790e+00	0.0136	31.0	3.82%	1053.2	2.22%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-5.681e+00	0.0150	23.0	2.83%	712.1	1.50%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.613e+00	0.0158	41.0	5.05%	1525.5	3.22%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-5.436e+00	0.0187	27.0	3.33%	901.5	1.90%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-2	-5.401e+00	0.0191	38.0	4.68%	1404.6	2.96%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-5.295e+00	0.0210	58.0	7.14%	2377.2	5.01%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-2	-5.215e+00	0.0225	31.0	3.82%	1097.8	2.31%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.157e+00	0.0236	15.0	1.85%	411.8	0.87%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-5.111e+00	0.0244	42.0	5.17%	1620.9	3.42%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-4.944e+00	0.0285	23.0	2.83%	760.0	1.60%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-4.750e+00	0.0342	16.0	1.97%	473.0	1.00%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2	-4.688e+00	0.0360	36.0	4.43%	1376.3	2.90%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-4.679e+00	0.0360	53.0	6.53%	2204.1	4.65%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.505e+00	0.0424	43.0	5.30%	1732.5	3.65%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-4.440e+00	0.0447	7.0	0.86%	141.3	0.30%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-4.346e+00	0.0486	35.0	4.31%	1362.8	2.87%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-4.204e+00	0.0555	84.0	10.34%	3860.6	8.14%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-4.085e+00	0.0619	51.0	6.28%	2181.0	4.60%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.007e+00	0.0662	78.0	9.61%	3580.8	7.55%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.848e+00	0.0768	8.0	0.99%	196.9	0.42%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-3.841e+00	0.0768	107.0	13.18%	5150.1	10.86%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-3.783e+00	0.0804	17.0	2.09%	574.9	1.21%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.758e+00	0.0816	37.0	4.56%	1523.7	3.21%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.747e+00	0.0818	45.0	5.54%	1923.1	4.05%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.745e+00	0.0818	30.0	3.69%	1183.1	2.49%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.727e+00	0.0819	19.0	2.34%	668.4	1.41%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.612e+00	0.0910	42.0	5.17%	1790.7	3.78%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-3.532e+00	0.0977	38.0	4.68%	1601.0	3.38%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.427e+00	0.1075	41.0	5.05%	1764.4	3.72%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.264e+00	0.1254	43.0	5.30%	1888.5	3.98%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.262e+00	0.1254	24.0	2.96%	943.0	1.99%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.182e+00	0.1337	34.0	4.19%	1444.1	3.04%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.180e+00	0.1337	22.0	2.71%	855.5	1.80%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-3.126e+00	0.1390	5.0	0.62%	111.5	0.24%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.096e+00	0.1420	30.0	3.69%	1255.8	2.65%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-2.967e+00	0.1600	67.0	8.25%	3191.9	6.73%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.955e+00	0.1607	4.0	0.49%	81.6	0.17%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.938e+00	0.1620	18.0	2.22%	687.9	1.45%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.842e+00	0.1769	20.0	2.46%	792.7	1.67%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-2.837e+00	0.1769	13.0	1.60%	462.1	0.97%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.770e+00	0.1870	78.0	9.61%	3822.1	8.06%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.723e+00	0.1944	24.0	2.96%	1001.2	2.11%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.715e+00	0.1944	10.0	1.23%	335.2	0.71%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-2.713e+00	0.1944	11.0	1.35%	380.4	0.80%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.706e+00	0.1944	16.0	1.97%	613.9	1.29%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-2.698e+00	0.1944	39.0	4.80%	1767.9	3.73%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.684e+00	0.1944	7.0	0.86%	207.7	0.44%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.651e+00	0.1992	16.0	1.97%	618.9	1.30%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.625e+00	0.2028	34.0	4.19%	1520.7	3.21%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.534e+00	0.2205	79.0	9.73%	3931.7	8.29%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.522e+00	0.2215	191.0	23.52%	10164.1	21.43%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.497e+00	0.2252	4.0	0.49%	95.5	0.20%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.482e+00	0.2270	24.0	2.96%	1030.1	2.17%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-1	-2.398e+00	0.2451	29.0	3.57%	1296.7	2.73%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.397e+00	0.2451	19.0	2.34%	790.2	1.67%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.361e+00	0.2505	17.0	2.09%	695.2	1.47%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.358e+00	0.2505	77.0	9.48%	3865.9	8.15%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-2.331e+00	0.2546	36.0	4.43%	1670.9	3.52%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.312e+00	0.2575	16.0	1.97%	652.0	1.37%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.288e+00	0.2620	30.0	3.69%	1364.5	2.88%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.177e+00	0.2908	9.0	1.11%	327.1	0.69%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.137e+00	0.3004	12.0	1.48%	473.4	1.00%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.126e+00	0.3016	17.0	2.09%	721.8	1.52%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.126e+00	0.3016	26.0	3.20%	1181.4	2.49%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.111e+00	0.3020	84.0	10.34%	4315.1	9.10%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.090e+00	0.3063	16.0	1.97%	675.1	1.42%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.089e+00	0.3063	8.0	0.99%	287.1	0.61%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.082e+00	0.3063	13.0	1.60%	527.2	1.11%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.067e+00	0.3070	30.0	3.69%	1399.3	2.95%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.055e+00	0.3087	4.0	0.49%	112.7	0.24%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.041e+00	0.3111	23.0	2.83%	1038.0	2.19%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.006e+00	0.3201	33.0	4.06%	1568.2	3.31%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.005e+00	0.3201	101.0	12.44%	5290.1	11.15%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.001e+00	0.3201	55.0	6.77%	2753.4	5.81%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.973e+00	0.3245	3.0	0.37%	75.2	0.16%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.971e+00	0.3245	7.0	0.86%	249.0	0.53%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.961e+00	0.3245	9.0	1.11%	344.6	0.73%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.950e+00	0.3256	26.0	3.20%	1208.7	2.55%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.928e+00	0.3308	56.0	6.90%	2825.5	5.96%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.913e+00	0.3337	26.0	3.20%	1214.7	2.56%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.912e+00	0.3337	37.0	4.56%	1799.7	3.79%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.903e+00	0.3337	8.0	0.99%	301.5	0.64%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.895e+00	0.3337	16.0	1.97%	698.2	1.47%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.891e+00	0.3337	20.0	2.46%	904.7	1.91%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.890e+00	0.3337	21.0	2.59%	956.8	2.02%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.886e+00	0.3337	11.0	1.35%	448.5	0.95%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.880e+00	0.3337	4.0	0.49%	120.7	0.25%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.866e+00	0.3337	9.0	1.11%	353.0	0.74%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.835e+00	0.3417	13.0	1.60%	554.0	1.17%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.831e+00	0.3417	24.0	2.96%	1122.2	2.37%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.818e+00	0.3437	2.0	0.25%	43.0	0.09%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.758e+00	0.3626	23.0	2.83%	1081.2	2.28%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.747e+00	0.3645	22.0	2.71%	1030.6	2.17%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.722e+00	0.3718	13.0	1.60%	566.2	1.19%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.710e+00	0.3740	15.0	1.85%	670.1	1.41%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.703e+00	0.3746	57.0	7.02%	2938.3	6.19%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.696e+00	0.3752	26.0	3.20%	1251.1	2.64%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.681e+00	0.3785	52.0	6.40%	2668.8	5.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.669e+00	0.3810	3.0	0.37%	87.7	0.18%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.662e+00	0.3818	88.0	10.84%	4677.0	9.86%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.633e+00	0.3908	5.0	0.62%	180.0	0.38%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.627e+00	0.3908	11.0	1.35%	475.1	1.00%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.601e+00	0.3991	11.0	1.35%	478.9	1.01%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.574e+00	0.4078	5.0	0.62%	183.6	0.39%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.535e+00	0.4216	76.0	9.36%	4047.7	8.53%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.529e+00	0.4221	4.0	0.49%	139.1	0.29%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.501e+00	0.4316	107.0	13.18%	5808.3	12.25%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.480e+00	0.4384	4.0	0.49%	142.7	0.30%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.458e+00	0.4459	12.0	1.48%	547.4	1.15%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.455e+00	0.4459	9.0	1.11%	393.0	0.83%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.440e+00	0.4493	17.0	2.09%	814.1	1.72%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.430e+00	0.4514	36.0	4.43%	1850.2	3.90%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.373e+00	0.4753	74.0	9.11%	3991.4	8.42%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.363e+00	0.4775	77.0	9.48%	4164.9	8.78%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.350e+00	0.4813	8.0	0.99%	352.9	0.74%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.345e+00	0.4816	4.0	0.49%	151.1	0.32%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.332e+00	0.4851	8.0	0.99%	354.8	0.75%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.329e+00	0.4851	26.0	3.20%	1323.5	2.79%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.273e+00	0.5098	63.0	7.76%	3406.8	7.18%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.260e+00	0.5136	7.0	0.86%	310.9	0.66%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.246e+00	0.5185	60.0	7.39%	3246.0	6.84%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.227e+00	0.5256	2.0	0.25%	63.6	0.13%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.218e+00	0.5277	5.0	0.62%	211.6	0.45%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.212e+00	0.5277	29.0	3.57%	1516.9	3.20%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.212e+00	0.5277	29.0	3.57%	1516.2	3.20%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.196e+00	0.5317	19.0	2.34%	966.5	2.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.190e+00	0.5326	25.0	3.08%	1299.4	2.74%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.185e+00	0.5326	4.0	0.49%	163.9	0.35%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.185e+00	0.5326	4.0	0.49%	163.9	0.35%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.174e+00	0.5332	35.0	4.31%	1861.7	3.93%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.172e+00	0.5332	66.0	8.13%	3613.4	7.62%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.159e+00	0.5339	1.0	0.12%	22.9	0.05%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.159e+00	0.5339	1.0	0.12%	22.4	0.05%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.125e+00	0.5498	13.0	1.60%	650.9	1.37%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.118e+00	0.5508	6.0	0.74%	273.5	0.58%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.118e+00	0.5508	29.0	3.57%	1540.0	3.25%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.107e+00	0.5521	59.0	7.27%	3240.6	6.83%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.091e+00	0.5581	15.0	1.85%	766.3	1.62%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.088e+00	0.5581	75.0	9.24%	4160.0	8.77%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.088e+00	0.5581	2.0	0.25%	71.0	0.15%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.066e+00	0.5649	34.0	4.19%	1836.9	3.87%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.062e+00	0.5649	19.0	2.34%	994.9	2.10%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.057e+00	0.5649	3.0	0.37%	122.2	0.26%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.055e+00	0.5649	1.0	0.12%	25.7	0.05%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.046e+00	0.5656	74.0	9.11%	4121.1	8.69%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.034e+00	0.5702	5.0	0.62%	229.1	0.48%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.028e+00	0.5711	32.0	3.94%	1734.3	3.66%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.015e+00	0.5762	124.0	15.27%	7012.5	14.78%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.014e+00	0.5762	46.0	5.67%	2534.1	5.34%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.010e+00	0.5762	24.0	2.96%	1287.3	2.71%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.002e+00	0.5762	13.0	1.60%	672.2	1.42%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-9.807e-01	0.5859	3.0	0.37%	128.5	0.27%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-9.794e-01	0.5859	89.0	10.96%	5014.1	10.57%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.526e-01	0.5975	2.0	0.25%	78.9	0.17%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.417e-01	0.6014	9.0	1.11%	461.0	0.97%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-9.380e-01	0.6014	1.0	0.12%	29.6	0.06%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.184e-01	0.6105	5.0	0.62%	242.3	0.51%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.957e-01	0.6219	22.0	2.71%	1204.3	2.54%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-8.869e-01	0.6247	1.0	0.12%	31.7	0.07%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-8.837e-01	0.6247	10.0	1.23%	526.4	1.11%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-8.762e-01	0.6263	9.0	1.11%	471.0	0.99%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-8.686e-01	0.6284	8.0	0.99%	416.1	0.88%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.591e-01	0.6319	9.0	1.11%	474.6	1.00%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-8.367e-01	0.6435	9.0	1.11%	478.8	1.01%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.263e-01	0.6476	23.0	2.83%	1281.9	2.70%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.247e-01	0.6476	85.0	10.47%	4865.2	10.26%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-8.199e-01	0.6476	10.0	1.23%	538.8	1.14%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-8.134e-01	0.6481	4.0	0.49%	199.1	0.42%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.058e-01	0.6505	153.0	18.84%	8827.2	18.61%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.980e-01	0.6529	2.0	0.25%	89.2	0.19%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.944e-01	0.6529	3.0	0.37%	145.5	0.31%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.564e-01	0.6726	1.0	0.12%	37.7	0.08%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.564e-01	0.6726	1.0	0.12%	37.4	0.08%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.522e-01	0.6728	9.0	1.11%	494.1	1.04%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.502e-01	0.6728	16.0	1.97%	899.1	1.90%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.495e-01	0.6728	33.0	4.06%	1885.6	3.98%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-7.408e-01	0.6728	4.0	0.49%	208.7	0.44%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.332e-01	0.6751	4.0	0.49%	209.2	0.44%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.257e-01	0.6776	26.0	3.20%	1487.9	3.14%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.931e-01	0.6974	2.0	0.25%	98.4	0.21%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.888e-01	0.6977	4.0	0.49%	215.9	0.46%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.885e-01	0.6977	18.0	2.22%	1033.4	2.18%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.691e-01	0.7062	7.0	0.86%	394.2	0.83%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-6.608e-01	0.7094	4.0	0.49%	219.2	0.46%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-6.447e-01	0.7181	44.0	5.42%	2573.6	5.43%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-6.408e-01	0.7183	18.0	2.22%	1048.5	2.21%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.375e-01	0.7183	3.0	0.37%	163.9	0.35%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.301e-01	0.7206	8.0	0.99%	462.0	0.97%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-5.946e-01	0.7439	63.0	7.76%	3717.7	7.84%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.859e-01	0.7476	8.0	0.99%	471.8	0.99%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.855e-01	0.7476	3.0	0.37%	170.6	0.36%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-5.850e-01	0.7476	172.0	21.18%	10121.9	21.34%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.526e-01	0.7645	63.0	7.76%	3744.1	7.89%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.433e-01	0.7688	6.0	0.74%	360.2	0.76%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.394e-01	0.7690	67.0	8.25%	3989.1	8.41%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.187e-01	0.7823	3.0	0.37%	180.2	0.38%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.108e-01	0.7856	13.0	1.60%	793.5	1.67%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.938e-01	0.7962	78.0	9.61%	4673.2	9.85%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.915e-01	0.7962	47.0	5.79%	2836.0	5.98%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-4.618e-01	0.8163	15.0	1.85%	932.9	1.97%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.578e-01	0.8166	6.0	0.74%	380.5	0.80%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.549e-01	0.8166	5.0	0.62%	318.6	0.67%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-4.428e-01	0.8231	1.0	0.12%	60.9	0.13%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.327e-01	0.8286	3.0	0.37%	195.2	0.41%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.304e-01	0.8286	7.0	0.86%	450.9	0.95%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-4.228e-01	0.8310	34.0	4.19%	2102.0	4.43%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-4.214e-01	0.8310	2.0	0.25%	131.7	0.28%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-4.173e-01	0.8310	3.0	0.37%	198.3	0.42%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-4.147e-01	0.8310	9.0	1.11%	580.9	1.22%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.134e-01	0.8310	7.0	0.86%	455.3	0.96%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.033e-01	0.8328	22.0	2.71%	1385.2	2.92%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.883e-01	0.8426	6.0	0.74%	399.1	0.84%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.792e-01	0.8473	11.0	1.35%	719.0	1.52%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.630e-01	0.8583	22.0	2.71%	1407.6	2.97%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.591e-01	0.8587	91.0	11.21%	5570.5	11.74%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.485e-01	0.8650	9.0	1.11%	604.2	1.27%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.464e-01	0.8650	16.0	1.97%	1045.0	2.20%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-3.449e-01	0.8650	17.0	2.09%	1108.9	2.34%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.262e-01	0.8756	9.0	1.11%	613.8	1.29%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-3.069e-01	0.8897	4.0	0.49%	292.6	0.62%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.041e-01	0.8897	71.0	8.74%	4431.8	9.34%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.034e-01	0.8897	8.0	0.99%	558.2	1.18%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.019e-01	0.8897	11.0	1.35%	752.3	1.59%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.019e-01	0.8897	5.0	0.62%	361.7	0.76%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.908e-01	0.8897	14.0	1.72%	949.1	2.00%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.875e-01	0.8897	6.0	0.74%	433.8	0.91%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.389e-01	0.9307	5.0	0.62%	385.5	0.81%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.360e-01	0.9307	3.0	0.37%	245.0	0.52%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.304e-01	0.9325	78.0	9.61%	4947.3	10.43%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.304e-01	0.9325	29.0	3.57%	1938.7	4.09%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.228e-01	0.9337	1.0	0.12%	94.0	0.20%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.158e-01	0.9372	2.0	0.25%	177.7	0.37%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.140e-01	0.9372	3.0	0.37%	253.7	0.53%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.119e-01	0.9372	29.0	3.57%	1956.3	4.12%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.082e-01	0.9372	10.0	1.23%	739.2	1.56%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.896e-01	0.9500	2.0	0.25%	186.4	0.39%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.803e-01	0.9559	12.0	1.48%	892.8	1.88%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.667e-01	0.9658	11.0	1.35%	836.4	1.76%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.648e-01	0.9658	27.0	3.33%	1881.4	3.97%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.595e-01	0.9667	11.0	1.35%	842.9	1.78%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.595e-01	0.9667	2.0	0.25%	198.3	0.42%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.570e-01	0.9667	9.0	1.11%	708.3	1.49%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.475e-01	0.9694	15.0	1.85%	1121.2	2.36%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.463e-01	0.9694	2.0	0.25%	204.9	0.43%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.409e-01	0.9699	112.0	13.79%	7180.0	15.14%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.364e-01	0.9712	14.0	1.72%	1066.6	2.25%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.349e-01	0.9712	105.0	12.93%	6768.4	14.27%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.343e-01	0.9712	1.0	0.12%	121.8	0.26%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.320e-01	0.9712	5.0	0.62%	444.2	0.94%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.304e-01	0.9712	31.0	3.82%	2184.7	4.61%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.295e-01	0.9712	1.0	0.12%	123.2	0.26%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.275e-01	0.9712	3.0	0.37%	295.8	0.62%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.158e-01	0.9712	4.0	0.49%	381.2	0.80%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.051e-01	0.9782	5.0	0.62%	466.6	0.98%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.047e-01	0.9782	6.0	0.74%	541.1	1.14%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.025e-01	0.9782	31.0	3.82%	2232.0	4.71%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.170e-02	0.9826	1.0	0.12%	142.7	0.30%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-8.843e-02	0.9829	20.0	2.46%	1535.6	3.24%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-8.279e-02	0.9855	12.0	1.48%	998.6	2.11%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.530e-02	0.9900	35.0	4.31%	2552.7	5.38%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.337e-02	0.9900	16.0	1.97%	1292.2	2.72%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.474e-02	0.9947	39.0	4.80%	2842.0	5.99%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.732e-02	1.0000	3.0	0.37%	373.3	0.79%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.713e-02	1.0000	74.0	9.11%	5151.7	10.86%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.412e-02	1.0000	15.0	1.85%	1326.3	2.80%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.000e-02	1.0000	11.0	1.35%	1095.7	2.31%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.494e-02	1.0000	3.0	0.37%	460.1	0.97%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.235e-02	1.0000	3.0	0.37%	474.2	1.00%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.120e-02	1.0000	1.0	0.12%	262.5	0.55%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.225e-03	1.0000	56.0	6.90%	4474.7	9.43%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	57.0	0.12%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	0.000e+00	1.0000	0.0	0.00%	202.7	0.43%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	131.5	0.28%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	112.5	0.24%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	29.9	0.06%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	14.0	0.03%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	58.9	0.12%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	40.8	0.09%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	163.6	0.34%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	60.0	0.13%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	9.2	0.02%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	6.9	0.01%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	5.0	0.01%