Information for 4-CCAGCTGGCW (Motif 5)

T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
Reverse Opposite:
C G A T A C T G A T G C A T G C G T C A T C A G G T A C C G A T A C T G A T C G
p-value:1e-27
log p-value:-6.303e+01
Information Content per bp:1.631
Number of Target Sequences with motif180.0
Percentage of Target Sequences with motif22.17%
Number of Background Sequences with motif4395.5
Percentage of Background Sequences with motif9.27%
Average Position of motif in Targets53.4 +/- 24.6bp
Average Position of motif in Background50.2 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCAGCTGGCW
VCAGCTGBNN
 T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:2
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---CCAGCTGGCW
VNAVCAGCTGGC-
 A C G T A C G T A C G T T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.79
Offset:4
Orientation:forward strand
Alignment:CCAGCTGGCW
----TTGGCA
 T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCTGGCW-
NVCAGCTGBBNN
 A C G T T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A A C G T
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:CCAGCTGGCW--
---NTTGGCANN
 T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CCAGCTGGCW
NAACAGCTGG--
 A C G T A C G T T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCTGGCW
AACAGATGGC-
 A C G T T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CCAGCTGGCW
NAHCAGCTGD--
 A C G T A C G T T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCTGGCW
CAGCAGCTGN--
 A C G T A C G T T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCTGGCW
NAACAGCTGT--
 A C G T A C G T T A G C G T A C G C T A C A T G A G T C C A G T A T C G T A C G T G A C G C T A
T C A G T G C A T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A C G T