Information for 12-CTTGGCCAGA (Motif 15)

T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A
Reverse Opposite:
C G A T A G T C A G C T A C T G C T A G A T G C A G T C C G T A C G T A A T C G
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.828
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif130.4
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets57.7 +/- 18.9bp
Average Position of motif in Background51.4 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTTGGCCAGA
-TTGGCA---
 T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTTGGCCAGA
NTTGGCANN-
 T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTTGGCCAGA--
--TGCCCAGNHW
 T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A A C G T A C G T
A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGCCAGA
TGATTGGCTANN
 A C G T A C G T T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTTGGCCAGA--
--ATGCCAGACN
 T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCCAGA
NNTTGGCANN-
 A C G T T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTTGGCCAGA
CTTGGCAA--
 T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTTGGCCAGA
CTAGGCCT--
 T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTGGCCAGA-------
CAAATCCAGACATCACA
 T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGCCAGA
CCGATTGGCT---
 A C G T A C G T A C G T T A G C G C A T A C G T C T A G A T C G A G T C A G T C C T G A T C A G G C T A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T