Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-107 | -2.485e+02 | 0.0000 | 110.0 | 13.14% | 267.4 | 0.58% | motif file (matrix) |
svg |
2 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-73 | -1.686e+02 | 0.0000 | 113.0 | 13.50% | 620.3 | 1.34% | motif file (matrix) |
svg |
3 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-45 | -1.058e+02 | 0.0000 | 160.0 | 19.12% | 2362.1 | 5.12% | motif file (matrix) |
svg |
4 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-42 | -9.806e+01 | 0.0000 | 236.0 | 28.20% | 5018.6 | 10.88% | motif file (matrix) |
svg |
5 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-41 | -9.493e+01 | 0.0000 | 217.0 | 25.93% | 4437.8 | 9.62% | motif file (matrix) |
svg |
6 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-40 | -9.402e+01 | 0.0000 | 137.0 | 16.37% | 1943.4 | 4.21% | motif file (matrix) |
svg |
7 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-40 | -9.293e+01 | 0.0000 | 134.0 | 16.01% | 1881.6 | 4.08% | motif file (matrix) |
svg |
8 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-38 | -8.881e+01 | 0.0000 | 122.0 | 14.58% | 1633.7 | 3.54% | motif file (matrix) |
svg |
9 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-38 | -8.875e+01 | 0.0000 | 176.0 | 21.03% | 3225.2 | 6.99% | motif file (matrix) |
svg |
10 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-38 | -8.757e+01 | 0.0000 | 127.0 | 15.17% | 1788.1 | 3.88% | motif file (matrix) |
svg |
11 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-37 | -8.643e+01 | 0.0000 | 113.0 | 13.50% | 1440.8 | 3.12% | motif file (matrix) |
svg |
12 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-27 | -6.307e+01 | 0.0000 | 74.0 | 8.84% | 841.5 | 1.82% | motif file (matrix) |
svg |
13 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-24 | -5.615e+01 | 0.0000 | 79.0 | 9.44% | 1073.3 | 2.33% | motif file (matrix) |
svg |
14 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-21 | -4.966e+01 | 0.0000 | 69.0 | 8.24% | 927.8 | 2.01% | motif file (matrix) |
svg |
15 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-21 | -4.912e+01 | 0.0000 | 63.0 | 7.53% | 785.0 | 1.70% | motif file (matrix) |
svg |
16 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-20 | -4.616e+01 | 0.0000 | 67.0 | 8.00% | 937.6 | 2.03% | motif file (matrix) |
svg |
17 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-19 | -4.555e+01 | 0.0000 | 59.0 | 7.05% | 743.7 | 1.61% | motif file (matrix) |
svg |
18 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-19 | -4.471e+01 | 0.0000 | 61.0 | 7.29% | 807.0 | 1.75% | motif file (matrix) |
svg |
19 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-19 | -4.463e+01 | 0.0000 | 50.0 | 5.97% | 544.8 | 1.18% | motif file (matrix) |
svg |
20 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-17 | -4.069e+01 | 0.0000 | 41.0 | 4.90% | 398.5 | 0.86% | motif file (matrix) |
svg |
21 |
| AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-16 | -3.785e+01 | 0.0000 | 68.0 | 8.12% | 1136.2 | 2.46% | motif file (matrix) |
svg |
22 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-16 | -3.761e+01 | 0.0000 | 273.0 | 32.62% | 9363.1 | 20.29% | motif file (matrix) |
svg |
23 |
| MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-15 | -3.642e+01 | 0.0000 | 99.0 | 11.83% | 2178.1 | 4.72% | motif file (matrix) |
svg |
24 |
| HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer | 1e-13 | -3.173e+01 | 0.0000 | 217.0 | 25.93% | 7219.7 | 15.65% | motif file (matrix) |
svg |
25 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-13 | -3.105e+01 | 0.0000 | 13.0 | 1.55% | 30.8 | 0.07% | motif file (matrix) |
svg |
26 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-11 | -2.708e+01 | 0.0000 | 127.0 | 15.17% | 3646.3 | 7.90% | motif file (matrix) |
svg |
27 |
| Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-10 | -2.403e+01 | 0.0000 | 236.0 | 28.20% | 8703.7 | 18.86% | motif file (matrix) |
svg |
28 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-8 | -2.058e+01 | 0.0000 | 45.0 | 5.38% | 878.6 | 1.90% | motif file (matrix) |
svg |
29 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-8 | -1.941e+01 | 0.0000 | 65.0 | 7.77% | 1611.0 | 3.49% | motif file (matrix) |
svg |
30 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-7 | -1.734e+01 | 0.0000 | 46.0 | 5.50% | 1015.6 | 2.20% | motif file (matrix) |
svg |
31 |
| Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-7 | -1.717e+01 | 0.0000 | 25.0 | 2.99% | 367.2 | 0.80% | motif file (matrix) |
svg |
32 |
| E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.604e+01 | 0.0000 | 143.0 | 17.08% | 5092.2 | 11.04% | motif file (matrix) |
svg |
33 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-6 | -1.548e+01 | 0.0000 | 49.0 | 5.85% | 1192.3 | 2.58% | motif file (matrix) |
svg |
34 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-6 | -1.470e+01 | 0.0000 | 51.0 | 6.09% | 1299.7 | 2.82% | motif file (matrix) |
svg |
35 |
| Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer | 1e-5 | -1.349e+01 | 0.0000 | 69.0 | 8.24% | 2067.1 | 4.48% | motif file (matrix) |
svg |
36 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-5 | -1.281e+01 | 0.0000 | 19.0 | 2.27% | 291.7 | 0.63% | motif file (matrix) |
svg |
37 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-5 | -1.248e+01 | 0.0000 | 39.0 | 4.66% | 954.5 | 2.07% | motif file (matrix) |
svg |
38 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-5 | -1.234e+01 | 0.0000 | 70.0 | 8.36% | 2181.9 | 4.73% | motif file (matrix) |
svg |
39 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-5 | -1.206e+01 | 0.0001 | 16.0 | 1.91% | 225.8 | 0.49% | motif file (matrix) |
svg |
40 |
| NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -1.075e+01 | 0.0002 | 39.0 | 4.66% | 1031.9 | 2.24% | motif file (matrix) |
svg |
41 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-4 | -1.073e+01 | 0.0002 | 42.0 | 5.02% | 1147.7 | 2.49% | motif file (matrix) |
svg |
42 |
| GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-4 | -1.069e+01 | 0.0002 | 22.0 | 2.63% | 433.7 | 0.94% | motif file (matrix) |
svg |
43 |
| RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-4 | -1.061e+01 | 0.0002 | 29.0 | 3.46% | 671.5 | 1.46% | motif file (matrix) |
svg |
44 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-4 | -9.741e+00 | 0.0005 | 97.0 | 11.59% | 3576.1 | 7.75% | motif file (matrix) |
svg |
45 |
| E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-4 | -9.700e+00 | 0.0005 | 140.0 | 16.73% | 5599.4 | 12.14% | motif file (matrix) |
svg |
46 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-4 | -9.653e+00 | 0.0005 | 74.0 | 8.84% | 2551.6 | 5.53% | motif file (matrix) |
svg |
47 |
| NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.469e+00 | 0.0006 | 9.0 | 1.08% | 95.0 | 0.21% | motif file (matrix) |
svg |
48 |
| NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-3 | -8.828e+00 | 0.0011 | 65.0 | 7.77% | 2225.0 | 4.82% | motif file (matrix) |
svg |
49 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-3 | -8.379e+00 | 0.0017 | 175.0 | 20.91% | 7492.8 | 16.24% | motif file (matrix) |
svg |
50 |
| Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-3 | -8.329e+00 | 0.0018 | 112.0 | 13.38% | 4428.3 | 9.60% | motif file (matrix) |
svg |
51 |
| Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-3 | -8.320e+00 | 0.0018 | 7.0 | 0.84% | 66.3 | 0.14% | motif file (matrix) |
svg |
52 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-3 | -8.182e+00 | 0.0020 | 83.0 | 9.92% | 3090.5 | 6.70% | motif file (matrix) |
svg |
53 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-3 | -7.740e+00 | 0.0030 | 71.0 | 8.48% | 2587.4 | 5.61% | motif file (matrix) |
svg |
54 |
| E-box(bHLH)/Promoter/Homer | 1e-3 | -7.714e+00 | 0.0030 | 15.0 | 1.79% | 296.5 | 0.64% | motif file (matrix) |
svg |
55 |
| E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.695e+00 | 0.0030 | 52.0 | 6.21% | 1749.6 | 3.79% | motif file (matrix) |
svg |
56 |
| MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-3 | -7.523e+00 | 0.0035 | 18.0 | 2.15% | 402.3 | 0.87% | motif file (matrix) |
svg |
57 |
| NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -7.495e+00 | 0.0036 | 127.0 | 15.17% | 5256.4 | 11.39% | motif file (matrix) |
svg |
58 |
| Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-3 | -7.371e+00 | 0.0040 | 37.0 | 4.42% | 1139.0 | 2.47% | motif file (matrix) |
svg |
59 |
| CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-3 | -7.148e+00 | 0.0049 | 27.0 | 3.23% | 751.0 | 1.63% | motif file (matrix) |
svg |
60 |
| Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.118e+00 | 0.0049 | 7.0 | 0.84% | 81.7 | 0.18% | motif file (matrix) |
svg |
61 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.752e+00 | 0.0070 | 38.0 | 4.54% | 1221.0 | 2.65% | motif file (matrix) |
svg |
62 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-2 | -6.734e+00 | 0.0070 | 61.0 | 7.29% | 2231.1 | 4.84% | motif file (matrix) |
svg |
63 |
| CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.720e+00 | 0.0070 | 33.0 | 3.94% | 1015.5 | 2.20% | motif file (matrix) |
svg |
64 |
| SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.587e+00 | 0.0078 | 60.0 | 7.17% | 2200.3 | 4.77% | motif file (matrix) |
svg |
65 |
| PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer | 1e-2 | -6.548e+00 | 0.0080 | 9.0 | 1.08% | 143.0 | 0.31% | motif file (matrix) |
svg |
66 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-2 | -6.446e+00 | 0.0088 | 92.0 | 10.99% | 3708.6 | 8.04% | motif file (matrix) |
svg |
67 |
| Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -6.397e+00 | 0.0091 | 12.0 | 1.43% | 238.2 | 0.52% | motif file (matrix) |
svg |
68 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-2 | -6.294e+00 | 0.0099 | 36.0 | 4.30% | 1170.0 | 2.54% | motif file (matrix) |
svg |
69 |
| Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer | 1e-2 | -6.211e+00 | 0.0106 | 52.0 | 6.21% | 1875.9 | 4.07% | motif file (matrix) |
svg |
70 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -6.206e+00 | 0.0106 | 95.0 | 11.35% | 3883.4 | 8.42% | motif file (matrix) |
svg |
71 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.151e+00 | 0.0109 | 50.0 | 5.97% | 1791.1 | 3.88% | motif file (matrix) |
svg |
72 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.096e+00 | 0.0114 | 39.0 | 4.66% | 1313.0 | 2.85% | motif file (matrix) |
svg |
73 |
| E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer | 1e-2 | -6.065e+00 | 0.0116 | 57.0 | 6.81% | 2115.1 | 4.58% | motif file (matrix) |
svg |
74 |
| MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -5.923e+00 | 0.0132 | 51.0 | 6.09% | 1857.5 | 4.03% | motif file (matrix) |
svg |
75 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.892e+00 | 0.0134 | 49.0 | 5.85% | 1770.4 | 3.84% | motif file (matrix) |
svg |
76 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-2 | -5.887e+00 | 0.0134 | 67.0 | 8.00% | 2595.5 | 5.63% | motif file (matrix) |
svg |
77 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-2 | -5.882e+00 | 0.0134 | 64.0 | 7.65% | 2456.7 | 5.32% | motif file (matrix) |
svg |
78 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-2 | -5.838e+00 | 0.0136 | 50.0 | 5.97% | 1820.9 | 3.95% | motif file (matrix) |
svg |
79 |
| NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer | 1e-2 | -5.730e+00 | 0.0150 | 10.0 | 1.19% | 193.5 | 0.42% | motif file (matrix) |
svg |
80 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-2 | -5.513e+00 | 0.0183 | 49.0 | 5.85% | 1806.5 | 3.92% | motif file (matrix) |
svg |
81 |
| Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-2 | -5.481e+00 | 0.0187 | 127.0 | 15.17% | 5563.6 | 12.06% | motif file (matrix) |
svg |
82 |
| ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer | 1e-2 | -5.458e+00 | 0.0189 | 128.0 | 15.29% | 5617.2 | 12.17% | motif file (matrix) |
svg |
83 |
| Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer | 1e-2 | -5.453e+00 | 0.0189 | 82.0 | 9.80% | 3359.1 | 7.28% | motif file (matrix) |
svg |
84 |
| KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer | 1e-2 | -5.395e+00 | 0.0197 | 101.0 | 12.07% | 4291.0 | 9.30% | motif file (matrix) |
svg |
85 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-2 | -5.392e+00 | 0.0197 | 56.0 | 6.69% | 2139.7 | 4.64% | motif file (matrix) |
svg |
86 |
| ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -5.331e+00 | 0.0205 | 89.0 | 10.63% | 3714.3 | 8.05% | motif file (matrix) |
svg |
87 |
| ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer | 1e-2 | -4.967e+00 | 0.0291 | 39.0 | 4.66% | 1407.3 | 3.05% | motif file (matrix) |
svg |
88 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-2 | -4.830e+00 | 0.0330 | 67.0 | 8.00% | 2723.4 | 5.90% | motif file (matrix) |
svg |
89 |
| Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer | 1e-2 | -4.696e+00 | 0.0373 | 14.0 | 1.67% | 371.5 | 0.81% | motif file (matrix) |
svg |